| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1326 |
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| Symbol | |
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| ID | 8357444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1583660 |
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| End bp | 1584535 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644963484 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_003121025 |
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| Protein GI | 256420372 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.589054 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAATGC GCCAACTCAA AATCACGAAA TCCATCACCA ATAGGGAGTC CCAATCTCTG
GAGAAATACT TGCAGGAAAT TGGGAAAGTG GATTTAATTA CACCGGAGGA AGAGGTGAAC
CTTGCTATAC GCATTAAGCA GGGCGACCAG AGAGCTCTTG AGAAACTGAC GAAAGCAAAC
CTCCGTTTTG TGGTGTCTGT TGCCAAACAG TATCAGAATC AGGGATTATC GCTCAGTGAT
CTGATCAATG AGGGAAATCT CGGCCTGATC AAAGCAGCAC AGCGTTTTGA TGAGACCCGT
GGTTTTAAGT TCATTTCTTA CGCCGTTTGG TGGATCCGTC AATCGATTCT TCAGGCATTG
GCCGAACAGA GTCGTATCGT AAGACTGCCG CTTAACAAAG TGGGGCTGAG CAACAAGATC
AGCAAGGCTT ACTCTCAGCT GGAACAGGAA TTTGAAAGAG AGCCATCTCC TGACGAACTC
GCTACCATTC TAGAGATCAA TACGGAAGAA GTAGAAGCTA CTTTAGGCGT TGCCGCCCGT
CACGTATCTA TGGATGCACC GTTTATCGAT GGTGAAGACA ACTCCCTGCT GGATGTACTG
GCAAATCCGA ATGCTGTGAA CGCAGACGAA GAACTGGATC ACCACGATTC CCTGCGCCGC
GAAATAGAAC GTTCTTTATC TACACTCACT GACAGGCAGA AAGATGTGAT CATCCTTTAC
TTCGGTATTG CAGTTGAACA TCCGATGTCC CTGGAAGATA TCGGTGAGAA ATTTGGTCTG
ACCCGCGAAC GTGTTCGCCA GATCAAGGAT AAAGCAATCA CTAAACTGCG TACTACTTCT
CGCAGCAAAC TGCTGAGAAA TTACCTGGGA AGTTGA
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| Protein sequence | MSMRQLKITK SITNRESQSL EKYLQEIGKV DLITPEEEVN LAIRIKQGDQ RALEKLTKAN
LRFVVSVAKQ YQNQGLSLSD LINEGNLGLI KAAQRFDETR GFKFISYAVW WIRQSILQAL
AEQSRIVRLP LNKVGLSNKI SKAYSQLEQE FEREPSPDEL ATILEINTEE VEATLGVAAR
HVSMDAPFID GEDNSLLDVL ANPNAVNADE ELDHHDSLRR EIERSLSTLT DRQKDVIILY
FGIAVEHPMS LEDIGEKFGL TRERVRQIKD KAITKLRTTS RSKLLRNYLG S
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