| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1310 |
|---|
| Symbol | |
|---|
| ID | 8357428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1567518 |
|---|
| End bp | 1568252 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644963468 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003121009 |
|---|
| Protein GI | 256420356 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.497978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTATT GTCAATTCAA ACCTCACCCT GATCTGTTGC CTTACATCGA TGCTTATTGG
GTCGTTGAAG GGCATCAGGC GCAGTATATT CAATCGAATA TATTGCCTGA CGGCTGTATT
GATCTGATCC TTAATCTGAA GGACGACTAC CGGGCAAAGA CGGGTGAACT GGCAATGGCG
GCCGGCAAGG CTTATCTCGT AGGTACTATG ACGACTTATA AGACTTCTTT TATCAGTCCG
GATAATAAAC TGGTCGGTAT TCGTTTTAAA CCTGCCGGGT TCTCTACTTT TTATCGCTTT
GCTTCACTCA GCGAAATAAC GGATGCGACG ATCGAATTTG ATGCGGCACT GTCTCCTGAT
CTGCATAAAA CTGCACAACA TTTTCTTGCT TACCTCAATC GTTTTTTTCT GCAAAGATTG
CAGCCACCAA AACATGCACT TGCGGCGATT ATACAGGATG TAGAACGCTC AAAAGGACAG
GTAGCGATAT CCGCACTTGC AGCAAGAAAC CATATTACGA CAAGACAACT GGAGCGGAAC
TTCCAACGCT ATATAGGTGT TAGTCCGAAG GAGTTTACCA ACATCGTGCG TTTCCGGTCT
GCACTTTCGC AGATCAAGTA CAATACACAG CAGGACAGCC TGTTAGCTAT TGCCCTGAAC
TGTGGCTATT ACGATCATGC GCATCTGACA AATGATATCA AAAAGTACGC TGGTGCGGCC
CCTTCTGTAA TCTGA
|
|---|
| Protein sequence | MSYCQFKPHP DLLPYIDAYW VVEGHQAQYI QSNILPDGCI DLILNLKDDY RAKTGELAMA
AGKAYLVGTM TTYKTSFISP DNKLVGIRFK PAGFSTFYRF ASLSEITDAT IEFDAALSPD
LHKTAQHFLA YLNRFFLQRL QPPKHALAAI IQDVERSKGQ VAISALAARN HITTRQLERN
FQRYIGVSPK EFTNIVRFRS ALSQIKYNTQ QDSLLAIALN CGYYDHAHLT NDIKKYAGAA
PSVI
|
|---|
| |