Gene Cpin_1226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1226 
Symbol 
ID8357342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1467505 
End bp1469706 
Gene Length2202 bp 
Protein Length733 aa 
Translation table11 
GC content47% 
IMG OID644963382 
Producthypothetical protein 
Protein accessionYP_003120925 
Protein GI256420272 
COG category 
COG ID 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000503641 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0807191 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGAT TTATAACTGT TATCTTATTG CTGGTTACCC TACAGGTGAC CCTGGTGCAT 
GCTCAGACGA CTCAGAAAAT TGATATACCT ATCGGACGAA TTGGTTTCCA TGATAATATC
GATAAAGAAC AGGCTGCCGC ACTGAAATTT GACGGAAAGG CGGACGACCT GGTACGTGTT
TCGGATGATC AGACGATCAA TCTGCAGGTG ACGGATGCGC TCATCAAACA GATTGACGAT
ATGCAGACCC AGATTGAACT GGATTCTGCC CTGGACCATC GTCTGAAGAT CAAATACCTG
TCCGGGCTCT ATGTGATGAT CCACGATTAT AACATCAAAC GTACCTACAC CCGGATCGCC
CCGGAGGAGG CGCCCGTGAT GGTGACCGCT TACCGTGAGA TGATGAAGGC TGATATAAAG
GGTCAAAGTA TTCTACCTTA TGTTTATCCT TTGTCTTTCG ACGCAGGTGA ACGTATGATA
GAGCCATTCA AAGACAACCC GGGGTATAAA GACGCCCGCG GAGTATTGTT TGCAAAATTT
GCTTTCAATA ACCTGGAAAC GGTGATGTCC CAGATAGGCA ATTACCTGGA ATATCCGGCT
ACAGACTCTG TTATTGCAGC CGTAGCCAGG AAGTATCCTA ACCAGGTGCT GACTTACGCT
ACTTCATATA CGCCGGTGGC TACCGCCATT AAAAAGAATC CTGATCCGAT CGTACAGCTG
ATCGTACAGA TAGGTAATTC CGGTAATTCT ACACTGATCC TTCCGTTTAT CGATGAACTG
ATGGCAGGAA CAACAACCGT GGACAAACTT TCTGCCGTAG TAGAAAATGA GGATAAATAC
TTCAGACAAC TGGTGAAAAG CGCCATTGTG CTGCAGCACA GAAAGAACAA CGGAGAAAAC
ATCATTGGTC TGAAAGCCAT GCTGGAAAAT ATGCAGGCAC GCTCCCTGCG TTACATCCGT
GAGATGAACG ACCTGCATGA AGAGCCTGCC AATGTGCGTT TCAGAATTGT AAAAGACTTT
AGCCCGGAAG AACTGTACTA CCTGATTGTA AACGGTCAGG AAGAGCTGTA TACTTCCAGT
TATACTAATC ATAATAACGC CGGTTTATAC GATCAGATGA TGGCGCGTAT GAAACCTCCA
CGTGGAGACA GTCTGCTGAT GCTGGTGGAA TTTGACAGGT TCAAAAAGTT CATCGCTATG
GCAGCCGGTT TTAATACCCT GGACAACTTC CTGAAGTCAA TGGCGCCGGA GAATGCAAAC
TACCTCATGA AGAAGTATGT GAGCAGTCTT GAGAAAACAG AAGACCTGGA AGATGCGGTG
GACGTAGCCA ACTCATTTGG TAGTATCCGC GATCCGAAAT TACTGGCTTT CCTGCGTGAA
GAAGTGCAGA AAAACTATAC GTTCGTATCC CGTAAGAAAG ACAGAAGAGG TACCGTGATC
TATGAATTGC TGGGCAGTCT TTTCGATACG GAAAACAACA GCGGCAGCGA TTCTACCAAA
GCGAGTCAGA TGGCCGCCAA ACTGCAATTG CCCCCGATCA ACTTCGTGAC TTATAACGCA
TTACTGAGCG ATAGCGGCCG TGTATACCAG CAGGTATTCT TCTATGGAGA TAAAGATGGT
CATGATTCAT ACGTGAGCTT CATGGGTAAC TTCCCTGCCA GCGAGTGGAA GATCAGTAAA
AACAAATACT GGACAACTAT TCAGTCTACC AAAGGCAAGC CGATCACCAT CTACGCCAAC
CTGCCACTGG AAGAGCCGGA AGATAAAACA GCGATCGAAA AGCTGAGTGA ATACCTGGAT
GAAAATGATA TTCATCCGAC CGTATTCATC CACCGCGGTC ACAGTTATCA TGTGAATACA
ACACTGGATA ACTTACAGAG CTCTGCGAAG ATTGTTGTAC TGGGTTCCTG TGGTGGTTAT
CATAACCTTG CGATTGTATT GCAGAAATCG CCTGAAGCAC ATATCATCTC TTCTAAGCAG
GTGGGTACGC GTTTCGTGAA TGAACCGATT ATCCGCACCC TGGACGAGAC GATCCGTGCC
GGTAAGAATG TTGACTGGGT ACAGATGTGG GCAGTATTGG GCAAACGCTT TGCAGGCGAC
GCCCGTAACA AGGAGCTGTT CAGCGACTAT GTGCCTCCGC ACAAAAACCT GGGCGCTATT
TTTATCAAGG CCTACAAACA GATCATGAAG GAAGACAAGT AA
 
Protein sequence
MKRFITVILL LVTLQVTLVH AQTTQKIDIP IGRIGFHDNI DKEQAAALKF DGKADDLVRV 
SDDQTINLQV TDALIKQIDD MQTQIELDSA LDHRLKIKYL SGLYVMIHDY NIKRTYTRIA
PEEAPVMVTA YREMMKADIK GQSILPYVYP LSFDAGERMI EPFKDNPGYK DARGVLFAKF
AFNNLETVMS QIGNYLEYPA TDSVIAAVAR KYPNQVLTYA TSYTPVATAI KKNPDPIVQL
IVQIGNSGNS TLILPFIDEL MAGTTTVDKL SAVVENEDKY FRQLVKSAIV LQHRKNNGEN
IIGLKAMLEN MQARSLRYIR EMNDLHEEPA NVRFRIVKDF SPEELYYLIV NGQEELYTSS
YTNHNNAGLY DQMMARMKPP RGDSLLMLVE FDRFKKFIAM AAGFNTLDNF LKSMAPENAN
YLMKKYVSSL EKTEDLEDAV DVANSFGSIR DPKLLAFLRE EVQKNYTFVS RKKDRRGTVI
YELLGSLFDT ENNSGSDSTK ASQMAAKLQL PPINFVTYNA LLSDSGRVYQ QVFFYGDKDG
HDSYVSFMGN FPASEWKISK NKYWTTIQST KGKPITIYAN LPLEEPEDKT AIEKLSEYLD
ENDIHPTVFI HRGHSYHVNT TLDNLQSSAK IVVLGSCGGY HNLAIVLQKS PEAHIISSKQ
VGTRFVNEPI IRTLDETIRA GKNVDWVQMW AVLGKRFAGD ARNKELFSDY VPPHKNLGAI
FIKAYKQIMK EDK