Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1224 |
Symbol | |
ID | 8357340 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1465778 |
End bp | 1466461 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644963380 |
Product | two component transcriptional regulator, winged helix family |
Protein accession | YP_003120923 |
Protein GI | 256420270 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0117785 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.00926138 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAGACC AAGCGGTTGC AGGTAAAATA TTGGTGGTGG ACGATGAAAT CGACATTCTG GAAATTATCA GCTATAATCT GAAGTCTGCA GGATATGATA CCATTACGGC AAAGGATGGC AGTGAGGCTG TACAGAAAGC GAAAGTATTC CGCCCCGACC TTATCATGCT TGATATCATG ATGCCAAACA AAAACGGTAT CGATACTTGT CGGGAAATAA GAAAATTGCC TGAATTTAAA GATACGATGG TGCTGTTCCT GACAGCCCTG AATGATGAAA AATCAGAAAT TGACGGTCTG AATATGGGTG CAGATGACTA CATCGCAAAA CCAATCAAAC CAAAATTGCT GGTAAGCCGT ATCAACGCGC TTTTCCGCCG TCTGCACAAA CCTGAAGATA CACAGGTACA GCTGGGCGAT CTGATCATCG ACCGTGAAAA ATTCACTGTA ACATACAAGG GCCAGGAAAT CATACTGGCT AAGAAAGAAT TTGAGCTGTT GCAATTACTG GCCTCAAAAC CCGGCCGTGT ATTCCTCCGC AATGAGATTC TCAATCAGGT GTGGGGTACG GAAGTGATTG TAGGCGATCG TACGATCGAC GTACATATCC GTAAAATACG CCAGAAAATA GGTATTGACC TTATCACCAC TGTTAAGGGA GTTGGTTACA AGTTCGAAAT GTAA
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Protein sequence | MIDQAVAGKI LVVDDEIDIL EIISYNLKSA GYDTITAKDG SEAVQKAKVF RPDLIMLDIM MPNKNGIDTC REIRKLPEFK DTMVLFLTAL NDEKSEIDGL NMGADDYIAK PIKPKLLVSR INALFRRLHK PEDTQVQLGD LIIDREKFTV TYKGQEIILA KKEFELLQLL ASKPGRVFLR NEILNQVWGT EVIVGDRTID VHIRKIRQKI GIDLITTVKG VGYKFEM
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