Gene Cpin_1224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1224 
Symbol 
ID8357340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1465778 
End bp1466461 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content43% 
IMG OID644963380 
Producttwo component transcriptional regulator, winged helix family 
Protein accessionYP_003120923 
Protein GI256420270 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0117785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.00926138 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATAGACC AAGCGGTTGC AGGTAAAATA TTGGTGGTGG ACGATGAAAT CGACATTCTG 
GAAATTATCA GCTATAATCT GAAGTCTGCA GGATATGATA CCATTACGGC AAAGGATGGC
AGTGAGGCTG TACAGAAAGC GAAAGTATTC CGCCCCGACC TTATCATGCT TGATATCATG
ATGCCAAACA AAAACGGTAT CGATACTTGT CGGGAAATAA GAAAATTGCC TGAATTTAAA
GATACGATGG TGCTGTTCCT GACAGCCCTG AATGATGAAA AATCAGAAAT TGACGGTCTG
AATATGGGTG CAGATGACTA CATCGCAAAA CCAATCAAAC CAAAATTGCT GGTAAGCCGT
ATCAACGCGC TTTTCCGCCG TCTGCACAAA CCTGAAGATA CACAGGTACA GCTGGGCGAT
CTGATCATCG ACCGTGAAAA ATTCACTGTA ACATACAAGG GCCAGGAAAT CATACTGGCT
AAGAAAGAAT TTGAGCTGTT GCAATTACTG GCCTCAAAAC CCGGCCGTGT ATTCCTCCGC
AATGAGATTC TCAATCAGGT GTGGGGTACG GAAGTGATTG TAGGCGATCG TACGATCGAC
GTACATATCC GTAAAATACG CCAGAAAATA GGTATTGACC TTATCACCAC TGTTAAGGGA
GTTGGTTACA AGTTCGAAAT GTAA
 
Protein sequence
MIDQAVAGKI LVVDDEIDIL EIISYNLKSA GYDTITAKDG SEAVQKAKVF RPDLIMLDIM 
MPNKNGIDTC REIRKLPEFK DTMVLFLTAL NDEKSEIDGL NMGADDYIAK PIKPKLLVSR
INALFRRLHK PEDTQVQLGD LIIDREKFTV TYKGQEIILA KKEFELLQLL ASKPGRVFLR
NEILNQVWGT EVIVGDRTID VHIRKIRQKI GIDLITTVKG VGYKFEM