Gene Cpin_1089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1089 
Symbol 
ID8357203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1305930 
End bp1307108 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content41% 
IMG OID644963243 
Productglycosyl transferase group 1 
Protein accessionYP_003120788 
Protein GI256420135 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGAAA AGAAAAGAAA ATGTTTGCTT TTGCTTACGA GAATTCCCTA TCCGCCGGTA 
GGAGGAGATA AGTTGAAAAG CTACCACCTC ATCAAAATCC TTAATAAACA TTACGACCTT
AACGTAATCG TCATAACGGA TGAAAGCGCA GATAATGCTG ATGCGAATCA GTTCCTCAGT
ACGCATTCCG CAGCATATAA GATCTTCTCT TTTCCTAAAC ACAGGTTTTA TATTAATGCA
TTGGCAGGCT TGCTGGGGAA AGAACCAATA CAGGTAGCAT ACTATTACTT CAGAGAAGTA
AAGAAGTATA TAGATGGTTT ATTGCCGCAA ACGGATTTTA TTATTGCAAA TCTGATCAGG
ACTGTCAAAT ACATAGAGTA TACAGATAAG CCGAAGTTTC TTGACATCGT AGATTCCATT
GCGATCAATT ATAAAAACGC CATAGATAAG GTTTCTTCTG TATTCTGGAA GAGCATTTAT
AAAGTAGAGA TACCGCGGAT CACTGCCATT GAGGAACGAT CTATCAGAAC TTTTAATGCT
ACGTTCTTTG TAAACAAGCA GGAGTCGGAA CACTGGGCAC AAACAGGAAA AGTGCGTTGG
ATCCCTAATG GTGTAAATCC GAAATTGTAC GATTATTCGA AAACGAATCC GCAATACCGA
AATGCCATTG TCTTTTTTGG GAAAATGGAT TACCAGCCGA ATATTGACGC TGTAACCTGG
TATCTGAAGA ATGTACATAG CCTTATTAGC CCTGATCTGG TGTTTTACAT CGTAGGGGTT
CATCCGGCGC CAGCTGTCAT TAAACTGGCT GAAAAGAATA AAAATGTAAT AGTGACTGGC
TTTATTGAAG ACCCGTATGA AATCATCAAT TCGGCCAGGG CTGTGATTGC ACCTATGCAG
ACAGGAGCTG GTATTCAGAA TAAAATCCTT GAGTCCATGG CTTTGGGGAA AGTAGTGGTG
GCCACTTCAC TGGCAGCGAG ACCCATTGTA GGTGCGCGGG ATGGCGAAGA TCTGTTAGTG
TCAGATGATC CGGTGCAGTT TGCAGGTTAC CTGAATGAGT TGGGCCAGGA TAATCATCCA
TACGCGAAGG TGGCTGCAAA TGCCAAAATA TTGATGCAGA ATTATACCTG GGAACGTTAT
GAGAAAACAT TAACAGCACT TATCGGTGAG GAGCTTTAA
 
Protein sequence
MIEKKRKCLL LLTRIPYPPV GGDKLKSYHL IKILNKHYDL NVIVITDESA DNADANQFLS 
THSAAYKIFS FPKHRFYINA LAGLLGKEPI QVAYYYFREV KKYIDGLLPQ TDFIIANLIR
TVKYIEYTDK PKFLDIVDSI AINYKNAIDK VSSVFWKSIY KVEIPRITAI EERSIRTFNA
TFFVNKQESE HWAQTGKVRW IPNGVNPKLY DYSKTNPQYR NAIVFFGKMD YQPNIDAVTW
YLKNVHSLIS PDLVFYIVGV HPAPAVIKLA EKNKNVIVTG FIEDPYEIIN SARAVIAPMQ
TGAGIQNKIL ESMALGKVVV ATSLAARPIV GARDGEDLLV SDDPVQFAGY LNELGQDNHP
YAKVAANAKI LMQNYTWERY EKTLTALIGE EL