Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1078 |
Symbol | |
ID | 8357192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1291623 |
End bp | 1294115 |
Gene Length | 2493 bp |
Protein Length | 830 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644963232 |
Product | polysaccharide export protein |
Protein accession | YP_003120777 |
Protein GI | 256420124 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAAAA AAGTATTACT GCTGCAACTG TTATTGCTGA CCGTAGGCCT TTGTGTACGG GCACAAGTAC CAGGCATGTC GCAGGCCCAA TTGAGTCAGG TTAAGGTTGA TAATCTTTCG GACGATCAGA TCAGACAGGT TGTCGCGGAG ATGAAAAAGA AGAACATCAG TTTTGGTGAA ATAGATGGGT ATGCTGCTCA GAGGGGGATT TCCTCTTCAG AAGTTGGCAA ATTAAAAGCG CGTATCCAAT CGCTGAACCT TGACAAGGAA TTGACGACTC AGGCTTCAGG AAGTGTATTT GATCAGGATT CTACCGGTCG TAGTTACAAT GGCTCTAATG CGGATACGAT TAACTATTAT CAGCAGAAAT TAAGGCAGGT AAGGGACAGA GAAGATTTTG AAAGGGAAGT ACGTCGCCGC AGAATATTCG GTATGGAGCT GTTTAGCACC CAGAATCTGA CTTTCGAGCC TAATCTGCGT ATGCCAACTC CTCCTAACTA TAAACTCGCT GCAGACGATG AGCTGATTAT CGATATATAT GGTTATTCTG AAGCACAGCA CAACCTTAGG GTGAATCCTG ACGGGTATAT CAGAATTCCT TATGTAGGAC CGGTATATGT GAGCGGGTTG ACGATGGATG AGGCTAAAAA GAGAATTACT ACGCAACTGA GTACCATTTA TTCAGGTATT AAAGCCGGTA ACACTTCGGT TCAGATTTCT CTTGGTAATA TTCGTAGTAT CAGGGTTATC ATGATCGGAG ATATATTCCG TCCGGGTACT TATACCCTGC CTTCCCTGGC AACAGTGGCA AATGCACTGT ACGTGTCCGG TGGACCTAAC GAAAACGGTT CTTTCAGGGC TATCGAGGTA ATCAGAGGCG GAAAGAAGGC AGCCACTTTC GACCTGTATG ATTTCCTCAT GAGAGGTGAT CTGACAGGTA ATATTGTATT GCAGGACCAG GATATCGTTA AAGTAAACAG TTATAAGAGA AGAGTCGAAC TGCTTGGTGA GGTAAAGCGT CCGGCGATAT TTGAGGCAAA GGAAAATGAA ACGCTGAAGG ATGTAATTGA TTTTGCGGGT GGATATACAG ATAATTCCTT CAGAGATGTG ATCAGGGCAT TGAGAGTGAA TAACAAGGCA AGAGAATATG TAAACATTCC GGCAGACTCA GTCGCTTCTT TCCGTTTGAA ATCAGGCGAT AGATTTTATA TTGATTCGAT CATCAATCGC TATACTAACA GGGTGACAAT TTCAGGCGCT GTTTTCCATG CAGGAGAATA TGCGTTGGAG GATGGAATGA CAATTGCCGA TCTGATCAAA AGGGCAGATG GCATACAGGA AGTGGCGGCG ACATCCAGGG GCATCATCCG CAGATTACAG GAAGACTATA CACCTACCAT TATCAACTTT AACGTGCAGG ATGTGATAGC TGGTAAGAAT AATATTTCGC TGATACGTGA GGATAGTGTA ATCATCTTTT CAAAGCTGGG TATCCGCGAA AATTATTTTG TGAAGATTGT GGGAGAAGTG AATCAGCCAG GGTATTTTAA TTACGGAGAC AGTATGCATC TGGAAGACCT GATTATCATG GCAGGTGGGC TGAGAGATGC GGCGAGTCTG AAACATATTG AGATTTCACG CCGTATTCGC AGCACTGCAG GTTATGATTC CTCTGATGCA CGTATGGCGA TTACCCAGCA ATTTGATGTG AGTGCAGACC TGGCTGCTGG TGGAGCCGGA TCATTTATAT TACAACCGTT CGACGAAATC GTGGTGCGTC GCGCACCTAA TTACAGCGAG CAGGTAAACG TGATGCTGGA CGGAGAACTC GTTTATCCGG GTGTATATGC GATAAACACA AAGAGAGAAC GTATCTCAGA TGTAATAAAG CGCGCAGGAG GACTTCGTCC GGAAGCATCT GCAGAAGGCG CCTATCTGAT TCGTAAAACT TATAATACGG AGAACGATAG TACATTTTTG CTAAATAAAC TGGATGTATT CTATAGCAAA GTCGCTGACA GTATCAATGT GGCAAAGACA CGTGCAAGTA TAGCGCGTAA CGGGCAACTG CTGGGTATTG AGCTGAACAA TATTATAGCG CATCCAGGAT CTAAATACGA TCTGTTACTG GAAGAAGGCG ATATTATTCA TGTGCCGAAG AAACTGCAGA CTGTACAGTT ATTTGGAGAG ATATATTTCC CGAAAAAGGT ACGCTTTGAC GATAATGCTT CATTCAGAAC TTATGTGCGT GGTGCGGGTG GGTTTACCTC CCAGGCACTG AGGCGCAGAA GTTATATCGT GTATGCCAAC GGAGAGGTAA AGAGTACCAG GAAATTGTTA TTCTTCAATA GCTTTCCTAA AGTAAAACCA GGTTCTGAAA TCTACGTTCC GACCAGACCT GAAAGAAAGG GTATAAATCC TGCGGCAGTA GGCTTGTTGA CAGGTCTGGC GTCCGTGGCT TTGATCGTGA TTACCATTAT TGACAAGTTG TAA
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Protein sequence | MLKKVLLLQL LLLTVGLCVR AQVPGMSQAQ LSQVKVDNLS DDQIRQVVAE MKKKNISFGE IDGYAAQRGI SSSEVGKLKA RIQSLNLDKE LTTQASGSVF DQDSTGRSYN GSNADTINYY QQKLRQVRDR EDFEREVRRR RIFGMELFST QNLTFEPNLR MPTPPNYKLA ADDELIIDIY GYSEAQHNLR VNPDGYIRIP YVGPVYVSGL TMDEAKKRIT TQLSTIYSGI KAGNTSVQIS LGNIRSIRVI MIGDIFRPGT YTLPSLATVA NALYVSGGPN ENGSFRAIEV IRGGKKAATF DLYDFLMRGD LTGNIVLQDQ DIVKVNSYKR RVELLGEVKR PAIFEAKENE TLKDVIDFAG GYTDNSFRDV IRALRVNNKA REYVNIPADS VASFRLKSGD RFYIDSIINR YTNRVTISGA VFHAGEYALE DGMTIADLIK RADGIQEVAA TSRGIIRRLQ EDYTPTIINF NVQDVIAGKN NISLIREDSV IIFSKLGIRE NYFVKIVGEV NQPGYFNYGD SMHLEDLIIM AGGLRDAASL KHIEISRRIR STAGYDSSDA RMAITQQFDV SADLAAGGAG SFILQPFDEI VVRRAPNYSE QVNVMLDGEL VYPGVYAINT KRERISDVIK RAGGLRPEAS AEGAYLIRKT YNTENDSTFL LNKLDVFYSK VADSINVAKT RASIARNGQL LGIELNNIIA HPGSKYDLLL EEGDIIHVPK KLQTVQLFGE IYFPKKVRFD DNASFRTYVR GAGGFTSQAL RRRSYIVYAN GEVKSTRKLL FFNSFPKVKP GSEIYVPTRP ERKGINPAAV GLLTGLASVA LIVITIIDKL
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