Gene Cpin_1078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1078 
Symbol 
ID8357192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1291623 
End bp1294115 
Gene Length2493 bp 
Protein Length830 aa 
Translation table11 
GC content44% 
IMG OID644963232 
Productpolysaccharide export protein 
Protein accessionYP_003120777 
Protein GI256420124 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGAAAA AAGTATTACT GCTGCAACTG TTATTGCTGA CCGTAGGCCT TTGTGTACGG 
GCACAAGTAC CAGGCATGTC GCAGGCCCAA TTGAGTCAGG TTAAGGTTGA TAATCTTTCG
GACGATCAGA TCAGACAGGT TGTCGCGGAG ATGAAAAAGA AGAACATCAG TTTTGGTGAA
ATAGATGGGT ATGCTGCTCA GAGGGGGATT TCCTCTTCAG AAGTTGGCAA ATTAAAAGCG
CGTATCCAAT CGCTGAACCT TGACAAGGAA TTGACGACTC AGGCTTCAGG AAGTGTATTT
GATCAGGATT CTACCGGTCG TAGTTACAAT GGCTCTAATG CGGATACGAT TAACTATTAT
CAGCAGAAAT TAAGGCAGGT AAGGGACAGA GAAGATTTTG AAAGGGAAGT ACGTCGCCGC
AGAATATTCG GTATGGAGCT GTTTAGCACC CAGAATCTGA CTTTCGAGCC TAATCTGCGT
ATGCCAACTC CTCCTAACTA TAAACTCGCT GCAGACGATG AGCTGATTAT CGATATATAT
GGTTATTCTG AAGCACAGCA CAACCTTAGG GTGAATCCTG ACGGGTATAT CAGAATTCCT
TATGTAGGAC CGGTATATGT GAGCGGGTTG ACGATGGATG AGGCTAAAAA GAGAATTACT
ACGCAACTGA GTACCATTTA TTCAGGTATT AAAGCCGGTA ACACTTCGGT TCAGATTTCT
CTTGGTAATA TTCGTAGTAT CAGGGTTATC ATGATCGGAG ATATATTCCG TCCGGGTACT
TATACCCTGC CTTCCCTGGC AACAGTGGCA AATGCACTGT ACGTGTCCGG TGGACCTAAC
GAAAACGGTT CTTTCAGGGC TATCGAGGTA ATCAGAGGCG GAAAGAAGGC AGCCACTTTC
GACCTGTATG ATTTCCTCAT GAGAGGTGAT CTGACAGGTA ATATTGTATT GCAGGACCAG
GATATCGTTA AAGTAAACAG TTATAAGAGA AGAGTCGAAC TGCTTGGTGA GGTAAAGCGT
CCGGCGATAT TTGAGGCAAA GGAAAATGAA ACGCTGAAGG ATGTAATTGA TTTTGCGGGT
GGATATACAG ATAATTCCTT CAGAGATGTG ATCAGGGCAT TGAGAGTGAA TAACAAGGCA
AGAGAATATG TAAACATTCC GGCAGACTCA GTCGCTTCTT TCCGTTTGAA ATCAGGCGAT
AGATTTTATA TTGATTCGAT CATCAATCGC TATACTAACA GGGTGACAAT TTCAGGCGCT
GTTTTCCATG CAGGAGAATA TGCGTTGGAG GATGGAATGA CAATTGCCGA TCTGATCAAA
AGGGCAGATG GCATACAGGA AGTGGCGGCG ACATCCAGGG GCATCATCCG CAGATTACAG
GAAGACTATA CACCTACCAT TATCAACTTT AACGTGCAGG ATGTGATAGC TGGTAAGAAT
AATATTTCGC TGATACGTGA GGATAGTGTA ATCATCTTTT CAAAGCTGGG TATCCGCGAA
AATTATTTTG TGAAGATTGT GGGAGAAGTG AATCAGCCAG GGTATTTTAA TTACGGAGAC
AGTATGCATC TGGAAGACCT GATTATCATG GCAGGTGGGC TGAGAGATGC GGCGAGTCTG
AAACATATTG AGATTTCACG CCGTATTCGC AGCACTGCAG GTTATGATTC CTCTGATGCA
CGTATGGCGA TTACCCAGCA ATTTGATGTG AGTGCAGACC TGGCTGCTGG TGGAGCCGGA
TCATTTATAT TACAACCGTT CGACGAAATC GTGGTGCGTC GCGCACCTAA TTACAGCGAG
CAGGTAAACG TGATGCTGGA CGGAGAACTC GTTTATCCGG GTGTATATGC GATAAACACA
AAGAGAGAAC GTATCTCAGA TGTAATAAAG CGCGCAGGAG GACTTCGTCC GGAAGCATCT
GCAGAAGGCG CCTATCTGAT TCGTAAAACT TATAATACGG AGAACGATAG TACATTTTTG
CTAAATAAAC TGGATGTATT CTATAGCAAA GTCGCTGACA GTATCAATGT GGCAAAGACA
CGTGCAAGTA TAGCGCGTAA CGGGCAACTG CTGGGTATTG AGCTGAACAA TATTATAGCG
CATCCAGGAT CTAAATACGA TCTGTTACTG GAAGAAGGCG ATATTATTCA TGTGCCGAAG
AAACTGCAGA CTGTACAGTT ATTTGGAGAG ATATATTTCC CGAAAAAGGT ACGCTTTGAC
GATAATGCTT CATTCAGAAC TTATGTGCGT GGTGCGGGTG GGTTTACCTC CCAGGCACTG
AGGCGCAGAA GTTATATCGT GTATGCCAAC GGAGAGGTAA AGAGTACCAG GAAATTGTTA
TTCTTCAATA GCTTTCCTAA AGTAAAACCA GGTTCTGAAA TCTACGTTCC GACCAGACCT
GAAAGAAAGG GTATAAATCC TGCGGCAGTA GGCTTGTTGA CAGGTCTGGC GTCCGTGGCT
TTGATCGTGA TTACCATTAT TGACAAGTTG TAA
 
Protein sequence
MLKKVLLLQL LLLTVGLCVR AQVPGMSQAQ LSQVKVDNLS DDQIRQVVAE MKKKNISFGE 
IDGYAAQRGI SSSEVGKLKA RIQSLNLDKE LTTQASGSVF DQDSTGRSYN GSNADTINYY
QQKLRQVRDR EDFEREVRRR RIFGMELFST QNLTFEPNLR MPTPPNYKLA ADDELIIDIY
GYSEAQHNLR VNPDGYIRIP YVGPVYVSGL TMDEAKKRIT TQLSTIYSGI KAGNTSVQIS
LGNIRSIRVI MIGDIFRPGT YTLPSLATVA NALYVSGGPN ENGSFRAIEV IRGGKKAATF
DLYDFLMRGD LTGNIVLQDQ DIVKVNSYKR RVELLGEVKR PAIFEAKENE TLKDVIDFAG
GYTDNSFRDV IRALRVNNKA REYVNIPADS VASFRLKSGD RFYIDSIINR YTNRVTISGA
VFHAGEYALE DGMTIADLIK RADGIQEVAA TSRGIIRRLQ EDYTPTIINF NVQDVIAGKN
NISLIREDSV IIFSKLGIRE NYFVKIVGEV NQPGYFNYGD SMHLEDLIIM AGGLRDAASL
KHIEISRRIR STAGYDSSDA RMAITQQFDV SADLAAGGAG SFILQPFDEI VVRRAPNYSE
QVNVMLDGEL VYPGVYAINT KRERISDVIK RAGGLRPEAS AEGAYLIRKT YNTENDSTFL
LNKLDVFYSK VADSINVAKT RASIARNGQL LGIELNNIIA HPGSKYDLLL EEGDIIHVPK
KLQTVQLFGE IYFPKKVRFD DNASFRTYVR GAGGFTSQAL RRRSYIVYAN GEVKSTRKLL
FFNSFPKVKP GSEIYVPTRP ERKGINPAAV GLLTGLASVA LIVITIIDKL