Gene Cpin_0961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0961 
Symbol 
ID8357075 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1152489 
End bp1153151 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content43% 
IMG OID644963115 
ProductABC transporter related 
Protein accessionYP_003120660 
Protein GI256420007 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000589963 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.143962 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACAAT TAAGACATAT CTCCAAGTAT TATCCCGTTG GATTTGGTAA GAATGAAATA 
TTAAAAGATA TTGATCTCAG AATTTTCGAA GGAGAGTTTG TATCTATAAT GGGCCCTTCC
GGTTCAGGTA AATCCACCTT GTTACATATA ATGGGCTTGC TGGAAGAACC TAATCAGGGC
GAATACCTGT TTGACGGAGA ACCGGTGCAT AAGATGAATG AGAAGAAACG TACCCAACTG
CACCGGGGCG CCATAGGATT TGTTTTCCAG GCTTATCACC TGATTGATGA GCTGACGGTA
TATGAAAACA TTGAGACACC ATTGCTATAT AAGAATGTTC CCGCTGCTGA ACGTAAGAGC
CGTGTGGCTG ATATCCTGGA TCGTTTCAAT ATAGTAGCTA AAAAAGACCT TTTTCCTAGT
CAGTTGTCCG GCGGACAACA ACAGCTGGTT GGTATAGCCC GTGCGCTGGT AGGCGAGCCT
AAAGTGATCC TGGCTGATGA ACCAACCGGT AACCTGCATT CTGATCAGGC GAAGGAGATC
ATGGAGCTGT TCAAGCAACT GAATGAAAAA GATAAGATTA CGATAGTACA GGTAACGCAT
TCCGAAGTTA ATGCAGGTTA TGGTCACAGG ATCATACAGA TCCGTGACGG GAAAATCGCA
TAA
 
Protein sequence
MIQLRHISKY YPVGFGKNEI LKDIDLRIFE GEFVSIMGPS GSGKSTLLHI MGLLEEPNQG 
EYLFDGEPVH KMNEKKRTQL HRGAIGFVFQ AYHLIDELTV YENIETPLLY KNVPAAERKS
RVADILDRFN IVAKKDLFPS QLSGGQQQLV GIARALVGEP KVILADEPTG NLHSDQAKEI
MELFKQLNEK DKITIVQVTH SEVNAGYGHR IIQIRDGKIA