| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0844 |
|---|
| Symbol | |
|---|
| ID | 8356958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1012951 |
|---|
| End bp | 1014765 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962998 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_003120543 |
|---|
| Protein GI | 256419890 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.926481 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCC GTAACATAGC AATCATTGCG CACGTAGACC ACGGTAAAAC TACCCTGGTT
GATAAAATCC TTCATCACAC CAACGTTTTC AGGGCTAACC AGGAAACAGG TGAGTTGATC
ATGGACAACA ACGACCTGGA AAAGGAACGT GGTATCACCA TCCTCAGTAA GAACGTATCT
GTTGAGTACA AAGGGGTGAA AATCAACGTA ATTGATACTC CGGGCCACGC CGACTTCGGT
GGTGAAGTTG AAAGGGTATT GAAAATGGCA GATGGTGTAA TCCTGTTGGT GGATGCCTTC
GAGGGACCAA TGCCTCAGAC CCGTTTCGTA CTGCAGAAAG CACTGCAGCT GAAACTGAAG
CCGATTGTGG TAATTAATAA AGTTGACAAG GCGAACTGCC GTCCTGACGA AGTGCATGAC
GCAGTATTCG AACTGTTCTT TAACCTGGAT GCAACGGAAG AACAGCTGAA CTTCCCGACC
TTCTACGGTT CCGGTAAGAA TGGCTGGTTC AACGATTCAT TAACACAGTG TGAAGATATC
ACTCCATTGC TGGATGGTAT CCTGGCGCAC GTTCCAGAAC CACAGATCCC AGAAGGTAAC
CTGCAGCTGC AGATCACTTC CCTGGATTAC TCTACCTTCC TTGGCCGTAT CGCTGTAGGA
CGTGTAGCGC GTGGTACTAT TAAGGAAAAC CAGCAGATCT CCCTGGTACA GACCGACGGT
TCTATCAAAA AGTCCCGTGT ACGTGAACTG TATACCTTCG AGGCACTGGG TAAAAAGAAA
GTAACTGAAG TTCAACCTGG CGATATCTGT GCGGTAGTAG GTCTGGAAGA CTTCAACATC
GGTGATACCA TCGCAGACTT CGAAGCTCCT GAAGCATTAC CGGTTATCAG CGTGGATGAA
CCAACCATGA ACATGCTGTT CAGTATCAAC AACTCTCCGT TCTTTGGTAA AGACGGTAAG
TTCGTTACCT CCCGTCACCT GCGTGACCGT CTGGTAAAAG AAACTGAAAA GAACCTGGCG
CTGCGCGTAG TTGATACAGA CAGTGCGGAT AGCTTCCTGG TATATGGTCG TGGTATCCTG
CACTTAGGTG TATTGATCGA GACTATGCGT CGTGAAGGAT TTGAGTTGAC TGTAGGTCAG
CCACAGGTAA TCCTGAAAAC TGTAGACGGT AAGAAATCTG AACCATATGA AACACTGGTA
GTAGACGTTC CTCAGGAATT CGCCAGTAAA GTAATTGACC TGGTAACTCG TCGTAAAGGT
GAGATGCTGA TCATGGAAAC TAAAGGTGAC ATGCAGCACC TGGAATTCGA AATTCCTTCC
CGTGGTCTGA TCGGTATGCG TACCCAGATG CTGACCAACA CTGCTGGTGA AGCTGTAATG
GCGCACCGTT TTATGGATTA CAAACCATGG AAAGGACCAA TCCCTGGTCG TAGCAATGGT
GTACTGATCG CTAAAGAAGC GGGTACTACT ACCGGTTACT CCCTGGATAA ATTGCAGGAT
AGAGGATTCT TCTTCGTAGA TCCAGGAGAA GAGGTGTACA AAGGCATGAT CATCGGTGAA
AACAACAAAC CTGGTGACCT GGTAGTGAAC CCGAACGAGG GTAAAAAACT GACCAACATG
CGTGCAAGTG GTAGTGACGC TGCAACCAGC ATCGCTCCTA AGACCCTGAT GACACTGGAA
GAGTGTATGG AGTACATCCA GCACGACGAG TGTATCGAGG TAACGCCTAA CCACATCCGT
ATGCGTAAAA CATACCTGGA TGAGGAAGAC AGGAAGAAAT TCCAGAAAGT AATGAAAGCA
GACGGTATCG CGTAA
|
|---|
| Protein sequence | MNIRNIAIIA HVDHGKTTLV DKILHHTNVF RANQETGELI MDNNDLEKER GITILSKNVS
VEYKGVKINV IDTPGHADFG GEVERVLKMA DGVILLVDAF EGPMPQTRFV LQKALQLKLK
PIVVINKVDK ANCRPDEVHD AVFELFFNLD ATEEQLNFPT FYGSGKNGWF NDSLTQCEDI
TPLLDGILAH VPEPQIPEGN LQLQITSLDY STFLGRIAVG RVARGTIKEN QQISLVQTDG
SIKKSRVREL YTFEALGKKK VTEVQPGDIC AVVGLEDFNI GDTIADFEAP EALPVISVDE
PTMNMLFSIN NSPFFGKDGK FVTSRHLRDR LVKETEKNLA LRVVDTDSAD SFLVYGRGIL
HLGVLIETMR REGFELTVGQ PQVILKTVDG KKSEPYETLV VDVPQEFASK VIDLVTRRKG
EMLIMETKGD MQHLEFEIPS RGLIGMRTQM LTNTAGEAVM AHRFMDYKPW KGPIPGRSNG
VLIAKEAGTT TGYSLDKLQD RGFFFVDPGE EVYKGMIIGE NNKPGDLVVN PNEGKKLTNM
RASGSDAATS IAPKTLMTLE ECMEYIQHDE CIEVTPNHIR MRKTYLDEED RKKFQKVMKA
DGIA
|
|---|
| |