| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0731 |
|---|
| Symbol | |
|---|
| ID | 8356843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 881720 |
|---|
| End bp | 883195 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644962883 |
|---|
| Product | glutamate synthase, NADH/NADPH, small subunit |
|---|
| Protein accession | YP_003120430 |
|---|
| Protein GI | 256419777 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000000132905 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAAC CAACAGGATT CCTGGAATTT ACCCGGGAGC TGCCGGGCAA ATCTCCTGCA
AAGGAAAGAG TCCAACACTA TAATGAATTC GTAGAGAAGT TTTCAGAATC AAAGCTGAAT
GAACAGTCTG CGCGCTGCAT GAACTGCGGC GTACCCTTCT GCCACAGCGG TTGCCCCCTG
GGTAACGTGA TCCCTGAATT CAACGATGCG GTGTATCATA AAGACTGGAA AGAAGCATAC
GATATATTAA CCAGTACCAA CAACTTCCCG GAATTTACAG GCCGTATCTG TCCTGCTCCG
TGTGAAAGTG CCTGTGTACT GGGTATCAAT CAGCCGCCGG TGGCGATCGA AGAAATCGAA
CGTCACATTA TCGAGATCGC ATTCGACAAA GGCCTGGTAC AGGCTAAAAC GCCAAGAGTG
CGTACCGGTA AGAAAGTGGC TGTTATCGGT TCAGGTCCTG CAGGCCTGGC TGCCGCAGCT
CAGCTGAACT ATGCGGGTCA CAGCGTAACC GTATTCGAAA GAGACGATGC GCCAGGTGGT
CTGCTGCGTT ACGGTATCCC TGACTTCAAA CTGGAAAAAT GGGTGATCGA CCGTCGTGTA
AAACTGATGG AAGAAGAAGG CGTCGTATTC CAGTGTAACG CTAACGTAGG TGTGAATATC
GGTGTAAACG ATCTGCTGCG TGAATACAAC GCGATCGTAC TGGCCGGTGG TTCTACTATC
CCACGCGACC TGGGTATCCC CGGCCGTCAG CTGAAAGGTG TTCATTATGC AATGGACTTC
CTGAAACAGC AGAACAAACG CGTAGGCAAC CGTGAAGTAG AAGGAGAGGA CATCCTCGCA
AGTGGCAAAA ACGTGATTGT AATCGGTGGT GGTGATACCG GCTCCGACTG TGTAGGTACT
TCTAACCGTC ATGGTGCAAT AGGTGTTACG CAGCTGGAAC TCTTGCCAAA ACCGCCAGGT
GAACGTACTG CATATATGCC TTGGCCGACT TACCCAATGG TGTTGAAAAC CTCTTCCTCA
CATGAAGAAG GCGCAAACCG TGAATGGGCT ATCGGTACAA AAGAATTCGT AGGCGATGAA
AACGGAAATC TGAAAGGATT AAAGATAGTG AAGCTTGAAT GGGCATTGGG TGCCGATGGC
AGACCAGGCA GCTTTAAAGA AGTGCCAGGT TCTGAACAGG AGATCCCTTG CGAGCTGGCA
TTCCTTGCGA TGGGTTTCTT ACATCCTCAA CATACCGGCT TGCTGGATGA ACTGGGTGTA
GACAGAGACG AGCGTGGTAA TGTAAAAGCA GGTGAGAAAG CCTTCCAGAC CTCCATATCC
AAGGTATTTG CCGCAGGCGA TATGCGTCGT GGTCAATCCC TCGTAGTATG GGCTATCAGC
GAAGGCCGTG AATGCGCCAG AAAAGTGGAC GAGTTTCTGA TGGGTGCATC ACAGCTTGAA
AGTAAAGATC ATTCTCTGCA GGCAATGGCT GTATAA
|
|---|
| Protein sequence | MGKPTGFLEF TRELPGKSPA KERVQHYNEF VEKFSESKLN EQSARCMNCG VPFCHSGCPL
GNVIPEFNDA VYHKDWKEAY DILTSTNNFP EFTGRICPAP CESACVLGIN QPPVAIEEIE
RHIIEIAFDK GLVQAKTPRV RTGKKVAVIG SGPAGLAAAA QLNYAGHSVT VFERDDAPGG
LLRYGIPDFK LEKWVIDRRV KLMEEEGVVF QCNANVGVNI GVNDLLREYN AIVLAGGSTI
PRDLGIPGRQ LKGVHYAMDF LKQQNKRVGN REVEGEDILA SGKNVIVIGG GDTGSDCVGT
SNRHGAIGVT QLELLPKPPG ERTAYMPWPT YPMVLKTSSS HEEGANREWA IGTKEFVGDE
NGNLKGLKIV KLEWALGADG RPGSFKEVPG SEQEIPCELA FLAMGFLHPQ HTGLLDELGV
DRDERGNVKA GEKAFQTSIS KVFAAGDMRR GQSLVVWAIS EGRECARKVD EFLMGASQLE
SKDHSLQAMA V
|
|---|
| |