| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0726 |
|---|
| Symbol | |
|---|
| ID | 8356838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 871321 |
|---|
| End bp | 872064 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644962878 |
|---|
| Product | major intrinsic protein |
|---|
| Protein accession | YP_003120425 |
|---|
| Protein GI | 256419772 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
|---|
| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0000820267 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCCT TATTAGCAGA ATTTCTGGGG ACGATGTTGA TGATATTGCT GGGTAATGGC
GTAGTGGCCA ATGTGATCCT CAACCAAACA AAAGGCCATG GCGGCGGCTG GATCGTGATC
ACCACCGGCT GGGCACTGGC AGTATTCATC GGGGTGGTCA TCGCTGGTCC CAGCAGCGGC
GCACACCTGA ATCCGGCAGT ATCGCTGGCG CTGGCTTTGG CTGGTAAACT CAGCTGGGCA
CAGTTTCCGT TATTTGTGAT TGCTCAGTTG CTGGGTGCGA TGTCAGGCGC TTTCCTTGTA
TGGGTGATGT ATAAAGATCA CCTGGATGAC ACGGCTGATC CGGGTCTGAT CCAGGCCTGT
TACTGTACGG CTCCGGCTAT CCGTAATACC GGCCGTAACC TGATCAGTGA GATTATCGGC
ACCTTTGTAT TGCTGTTTAC TATTTTTTAT ATCGTCGACA AAGGAGAATT TGGTGCTGAC
AAGACGCCGA TTGGTATGGG ATCATTAGGA GCAGTGCCTG TTTCGCTGCT GGTACTGGCG
ATTGGCTTGT CCCTCGGAGG CACTACAGGT TATGCGATCA ATCCTGTCAG AGATTTCGGT
CCCCGGCTGA TGCACGCCAT ATTACCTGTG AAAGGAAAAG GCGGCAACGG GTGGGATTAT
GCCTGGATCC CGATAATTGG TCCATTGGCC GGAGCGGCCC TTGCAGCAGG ACTTTTCCTC
TGCATGAAGG CTGGGGCGAT TTAA
|
|---|
| Protein sequence | MNPLLAEFLG TMLMILLGNG VVANVILNQT KGHGGGWIVI TTGWALAVFI GVVIAGPSSG
AHLNPAVSLA LALAGKLSWA QFPLFVIAQL LGAMSGAFLV WVMYKDHLDD TADPGLIQAC
YCTAPAIRNT GRNLISEIIG TFVLLFTIFY IVDKGEFGAD KTPIGMGSLG AVPVSLLVLA
IGLSLGGTTG YAINPVRDFG PRLMHAILPV KGKGGNGWDY AWIPIIGPLA GAALAAGLFL
CMKAGAI
|
|---|
| |