| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0723 |
|---|
| Symbol | |
|---|
| ID | 8356835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 866788 |
|---|
| End bp | 868317 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644962875 |
|---|
| Product | protein of unknown function DUF187 |
|---|
| Protein accession | YP_003120422 |
|---|
| Protein GI | 256419769 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1649] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.977614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00880657 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGT ATTTATTGGG TGTTGCGCTG TTGCTAACAG GTATCTTCGG CCGGGCAAAA
GCACAATTGC CACCTAAACG GGAATTTCGT GCAGTCTGGA TTGCCACGGT GGAAAACATA
GACTGGCCCT CAAGAAAAGG GTTACCGGTC GAAACACAGA AACAGGAATT TATCAATCTC
CTCGATAAGC ATCAACGCAA CGGGATGAAT GCCGTTATTG TGCAGATCCG CCCTGCCGCC
GACGCATTCT ATGATTCTCC ATTCGAACCC TGGTCCGAAT ACCTCAGCGG GGTACAGGGA
CAAGCGCCTA ATCCATATTA TGATCCCCTC CGCTTTATGC TGGAGGAAAC ACATAAAAGG
GGGATGGAAT TCCATGCATG GTTCAATCCT TACCGTGCCG TTATCCGGAA TGCCTCTGCC
AATCACATTT CCCGTATGCG CCCACAGTGG TTCGTGAACT TTGATGGTAA AAAATACTTC
GACCCCGGTA TTCCAGAGGT ACGTGAATAT GTCACCCAGA TCATCCGCGA CGTCGTACGC
CGCTATGATA TTGATGCCGT GCACTTTGAC GATTATTTCT ATCCTTACCC GGTTCCCGGC
AGAGAATTCG GCGACAATAA TTCCTACCGC CAGTATGGTC GTAACATGAT GAAAGACGAC
TGGCGCCGCT GGAACGTAGA CACCATCATC CAGATGGTCA GTAAAATGAT CAAGGAAGAA
AAGCCCTGGG TAAAATTCGG TATCAGTCCC TTCGGCATCT GGCGTAACAA GAACAAAGAC
CAGGATGGTT CTTATACTAC TGGTCTTTCC AACTACGACG ATCTCTATGC AGACGTTCGC
AAATGGTTGC AGAATGGCTG GATCGATTAT GTAGCCCCAC AACTCTACTG GGAGCGTGGT
CACCGTGTCG CCAACTACGA ACTGCTCCTC AACTGGTGGG CACAACACGG ATACGGTCGC
AACGTATACA TCGGCCATGG GGTATACCGC CTCCGCAGCA ATGCTGCCTG GAGCATTCCC
AACGAACTGC CGGTACAAAT CACGGAAGTC CGTACGCTTA ACACTATTCA GGGTAGCGCC
TTCTACAGCG CCAAGTCCTT CAATGGCAAT CCTTTAGGCA TAGAAGACAG TCTCCGTAAC
CACTTTTACC GCTATCCGGC CCTGCGTCCA GCAATGCCCT GGATAAAAAT GCCGACGCCT
TTCCCGCCAT ACTTTACAGA TGCCTTTGAA CGTGCCGATG GCTTACACCT ACACTGGGCA
GACGATGATA CGTCTGGTCG TACGCAGCAA TATGTGATAT ACCGCTTTAA CGCCAGTGAG
TCCATCAACC TGAACGATCC GAGCAAAATA CTGGCTATCG TACAGCAAAT GCCTGATCCT
CAGTTCATAG ATGCCTCTTA TGTAAAAGGC GCCCTGTACA CCTATGTAAT CACCGCCATG
AACAGACTAC AAATGGAAAG CTGGGCCAGT GACCCGCTCT ACATGCGGCA GTCCGGTAGG
AAAACACAAT TCATATTTGA CCCGGAATAA
|
|---|
| Protein sequence | MLKYLLGVAL LLTGIFGRAK AQLPPKREFR AVWIATVENI DWPSRKGLPV ETQKQEFINL
LDKHQRNGMN AVIVQIRPAA DAFYDSPFEP WSEYLSGVQG QAPNPYYDPL RFMLEETHKR
GMEFHAWFNP YRAVIRNASA NHISRMRPQW FVNFDGKKYF DPGIPEVREY VTQIIRDVVR
RYDIDAVHFD DYFYPYPVPG REFGDNNSYR QYGRNMMKDD WRRWNVDTII QMVSKMIKEE
KPWVKFGISP FGIWRNKNKD QDGSYTTGLS NYDDLYADVR KWLQNGWIDY VAPQLYWERG
HRVANYELLL NWWAQHGYGR NVYIGHGVYR LRSNAAWSIP NELPVQITEV RTLNTIQGSA
FYSAKSFNGN PLGIEDSLRN HFYRYPALRP AMPWIKMPTP FPPYFTDAFE RADGLHLHWA
DDDTSGRTQQ YVIYRFNASE SINLNDPSKI LAIVQQMPDP QFIDASYVKG ALYTYVITAM
NRLQMESWAS DPLYMRQSGR KTQFIFDPE
|
|---|
| |