Gene Cpin_0659 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0659 
Symbol 
ID8356771 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp799535 
End bp802870 
Gene Length3336 bp 
Protein Length1111 aa 
Translation table11 
GC content50% 
IMG OID644962811 
Productsuperfamily I DNA and RNA helicase 
Protein accessionYP_003120358 
Protein GI256419705 
COG category[L] Replication, recombination and repair 
COG ID[COG1112] Superfamily I DNA and RNA helicases and helicase subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0681058 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGATG CCCAGCCCAT TAATATGTCA GTGAATAAGA CTAATGCATC CCCGCATCAC 
CTTACCGGTC ATGCCTGTTA TATGCGTCTG CTGGAAATTT CCGACAGACC ATCTCCCGTA
GAGATCATAC GGCACCTGAG ACAACTGCTC GATCAGTTGT TCCGGCACCT TACCCGGGAA
GAACCCCGTA GCTTCGGCAA TCTCTTTGCC CGGATGCAGT TCTACTTCGA TAAATACACC
GTTCCCCCAC ACCTGGAGGA ACAATTAACC ATACTTCGCA TACTTACTTA TAAAGCCATT
AACCATCATC TGCGAACAGA CGATGAACTG GCCCTGATCT GCATCCGCAC AATGGCAGAC
ACCATCTGTC ATTTTTTTGA GGAACCCATT CCTGAAATAC TGGAGGGCTT GTGCTGTAAC
GTGAAAGAAA AAACATTATC CTATGCGCCA CAGCTTTCGG AAGAACTGGT ACCGCAATTG
AAATGTCTGG TCACACAGGT GGGTAATCTC CAGAAAAAAC CAGGACATGC CCCTTATTTT
ATGCTGGGCT GTCATAACGA CGAACTGGGA CCATTTCAGC TGATGATCTC AGAAAGCGTG
TATACACATG CCACTTCGCT GCATACGCAG TTAAGAGCCT ACGATACCAT ACACGTACTC
TATTGCAGCA AAAGCGAGGC GCCACAGGTA TATGAAGCAG TAAGTGTTAC CCGCATCATC
CTGGAGCCAG ATCTGCTGAT CGACATCAGC GACCTGGCGG AATGTTTCGG AAGACACGGC
TCGCATAAAC TGCTTTACCT GGTGAGAAAA CTGGTGCCGC AGACGCCAGG CATTGCCGCT
TTTAAGGGGA ACGTAGTCAA CTCCCTGCTG GACAATGTAT TGCGCGATCC GAAAATGGAG
CTGCGACAGT CCTTTGTAGA AGCAGTAACC GATCACGTAT TACAGGCGGC CGCTTACGGC
AGAGAAGCGC TCAACAGCAT GTTTGCCGAC ATACGCAGTC TGCACTGGCC CAACCTGCTG
CAATCAGCCG CAGAAATGCA TAACCGACCC GTCAGAATAG AGCCGACCTT CTTCTCCGCC
AACTACGGAC TACAAGGACG ACTGGATATC CTGGCAGAAG ACGAAAGTGA TCCCCTGCGC
AAAGAAATCT TCGAATTAAA AAGCGGACGC AGTCCGGAAT ATGGCGCCTG GAAGAATCAC
GAAATGCAGG TAGTCGGCTA TAATCTCCTC CTGCAATCCG CTTTTGGCGA TGAAAGACGC
GGCAGTTCTG CGATCCTTTA CTCCGCAGCA GCAGATACGC CACTCCGGAA TGTCAGCAGC
AGCCGGCAGG CAGAAAACGA ACTGCTGGCA CTCAGAAATG AAATAGTATC CCAGTTGCTG
AGACTAGCAG CCGGTGAATA CGATATACTG GATAAAATCA CAGAGGAAGC AGCTGAAGGA
TTACCGGCTT TTAACGTGGT GCACTTCACC GCCTTCCACG AGGTATACCA TAATGCCAGC
CCTTTACTAC GGACTTACTA TCAACAGTTT CTGTCCTTTT TGTTAAGAGA ATACCTCTTG
GCGAAATGCG GCATGTACTC CGCCGCCGAA AGGGAAGAAG ACGCCGAAGG TTTTGCCGCC
TTATGGCTGC TGCACGAGCA GGAAAAACTG GAGCGTTTTA ATATCATGCC CGGTCTGCAA
TTCCGGCATT TCGATACCGA CAGCAGTACG GTGGTCTTTA ATGTCCAGAT TCCGGTCAAC
CATAACTTCC GTCCGGGAGA TACTGCTATT ATCTATCCCC GTTCAGCTGA CGGACTCTTT
CCCCTCCGTC ACCAGGTACT TAAAGGCAGG ATCGATGACC TTGCAAAAGA TACACTTACA
TTCTCGCTCA ATAACCGGCA GATTGGTCAT GACTTCTTTG CACAGCAACA GTTATGGGCG
ATCGAACACG ATATCTATGA ATCGAATTAC TGGATAGCGG CAACCGCTTT GTTTCATGTA
CTGGAGCCCC GGTTACAGGA GAAAATGGAG CTACTGCTGG GACGCAGAGC GCCGCAGACG
GCTCCTATAA GTATTCCCGT ACCAAAGATG TTCAATAACA ACCAGCAGGA CATTCTCCAG
GCTGCGCTGG ACGCCGAGGA CTATTACCTG ATACAGGGAC CACCCGGCAC CGGTAAGACC
TCTGCCTTGC TGACCGCATT GGTGGGCGTA TTGGCAGAGA CAGAAACACA GACGATCGTG
GTTGCTTTTA CCAACAGGGC TGTGGAAGAG ATCTGCCGGA AACTGGATAC CAAAGGCATT
GCTCACCTGC GTATGGGTAG CCGCCGTTCT GCTACCGAAA ATCGCCTGCG GCAGTATTGT
CTGGAAGGAG ACATCGCGGG CGCTGCGCAG TTCATTCTTC AGCAACGCGT ATTCGTAGGT
ACTGTAGCCA CCATGGCGAC CCGCCTGCAC CTGTTACAGA TGCTGGGGGT AAAAACAGAC
GTCCTGATTG CAGACGAAGC CTCTCAGCTT ACAGAGCCAC AATTACTGGG TTTACTGATG
CCGTTCAGGA AATTTATCCT GATAGGTGAT CAGAACCAGC TGCCTCCGGT AGTAGCCCAG
GACGATTTTT TCTGCCATAC CACACAGGCT TTACTAAATG CAGAAGGGAT CTCCGATCTG
CGTTGTACCT TGTTTGAACG GCTGATCAGG CGTTGTAAGG ACAACCACTG GCACTATGCC
TGGGGTATGC TGAATACACA CTTCCGTATG CATACGGATA TCGCCTCACT GATCAATCAC
TATTATGCCG GTCAGCTCTC TGCAGGTAGC GTGCAACAGT CAGTCCCTTA CAATATGACA
GAACATCCGG GTAGTGAAAA TTGGGCACAG ATACTGTCGA AAGGGCGTAC GCTGTTCATC
CCCAGTCCGC TGGAACCTAC TTCTAAAATG AACAGGACAG AGGCCAACAG GGTCGTATCG
CTGCTACACT ATCTGCGTAA CCGGTACGGG CATCGTTTCA GCAAGGAAAC CGTTGGTGTG
GTAACGCCCT GGCGTACACA GATCAGTCTT ATCCGGGAAA TGATCGGTAA TGACGAGCAG
TTACAGGCCA TCAATATTGA CACGGCAGAA AGATTTCAGG GAGCGGAAAA CGATATCATT
ATTATCTCAC TGGCGGTATA CCATCCGGTA CAACTGGGTT TGTTGCAAAA CCTGGGTGTA
TTTCACTGGG AGCAGGACAG GGTAGAGGTA GACAGGAAAC TGCTGGTCAC CTTGTCACGT
GCAAGGCACC AGGTGATCAT TATGGGATAT GAACCGGTAC TGAGAGCCAG CAGTCATTAT
AAAGAACTGC TGAATAGCGT CACTAGTTGC GTATAA
 
Protein sequence
MIDAQPINMS VNKTNASPHH LTGHACYMRL LEISDRPSPV EIIRHLRQLL DQLFRHLTRE 
EPRSFGNLFA RMQFYFDKYT VPPHLEEQLT ILRILTYKAI NHHLRTDDEL ALICIRTMAD
TICHFFEEPI PEILEGLCCN VKEKTLSYAP QLSEELVPQL KCLVTQVGNL QKKPGHAPYF
MLGCHNDELG PFQLMISESV YTHATSLHTQ LRAYDTIHVL YCSKSEAPQV YEAVSVTRII
LEPDLLIDIS DLAECFGRHG SHKLLYLVRK LVPQTPGIAA FKGNVVNSLL DNVLRDPKME
LRQSFVEAVT DHVLQAAAYG REALNSMFAD IRSLHWPNLL QSAAEMHNRP VRIEPTFFSA
NYGLQGRLDI LAEDESDPLR KEIFELKSGR SPEYGAWKNH EMQVVGYNLL LQSAFGDERR
GSSAILYSAA ADTPLRNVSS SRQAENELLA LRNEIVSQLL RLAAGEYDIL DKITEEAAEG
LPAFNVVHFT AFHEVYHNAS PLLRTYYQQF LSFLLREYLL AKCGMYSAAE REEDAEGFAA
LWLLHEQEKL ERFNIMPGLQ FRHFDTDSST VVFNVQIPVN HNFRPGDTAI IYPRSADGLF
PLRHQVLKGR IDDLAKDTLT FSLNNRQIGH DFFAQQQLWA IEHDIYESNY WIAATALFHV
LEPRLQEKME LLLGRRAPQT APISIPVPKM FNNNQQDILQ AALDAEDYYL IQGPPGTGKT
SALLTALVGV LAETETQTIV VAFTNRAVEE ICRKLDTKGI AHLRMGSRRS ATENRLRQYC
LEGDIAGAAQ FILQQRVFVG TVATMATRLH LLQMLGVKTD VLIADEASQL TEPQLLGLLM
PFRKFILIGD QNQLPPVVAQ DDFFCHTTQA LLNAEGISDL RCTLFERLIR RCKDNHWHYA
WGMLNTHFRM HTDIASLINH YYAGQLSAGS VQQSVPYNMT EHPGSENWAQ ILSKGRTLFI
PSPLEPTSKM NRTEANRVVS LLHYLRNRYG HRFSKETVGV VTPWRTQISL IREMIGNDEQ
LQAINIDTAE RFQGAENDII IISLAVYHPV QLGLLQNLGV FHWEQDRVEV DRKLLVTLSR
ARHQVIIMGY EPVLRASSHY KELLNSVTSC V