Gene Cpin_0616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0616 
Symbol 
ID8356727 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp754546 
End bp755664 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content47% 
IMG OID644962767 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_003120315 
Protein GI256419662 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTTA TCGTTTCTTC CTCTACTTTG TTAAAACAAT TGCAGCAGAT CAGCGGGGTG 
ATCAACTCTA ATACGGTGTT GCCTATATTG GAAGATTTCC TTTTCCTGAT CGATAAGAAC
GAACTGACTG TAGTAGCTAC GGATCTCGAG ACTGTGATGA AGGTAAAGCT GGAGGTTGAA
GCCAAAGAAA GCGGCCGTAT CTGTATCCCG GCTAAGATCC TGATGGATTC ACTCAAAAAC
CTGCCTGACC AGCCGCTCAC GTTTCATATA GATCTTAACT CATACGCGGT TGAAATTACT
TCCGACAACG GTAAGTACAA GGTGATGGGA GAGAATCCTG AGAACTTCCC GAAAGAACCA
GCTGCGGATG ATACAACTTC ATTCACCGTT TCAGCAACAG CCCTGGTTAC AGCCATCAAC
AAAACCCTGT TTGCCGTAAG CAACGACGAC CTTCGTCCTG CCATGACAGG TGTTTTCTTC
GAACTGACAC CAACCAGCCT CACTTTCGTA GCAACCGACG CTCACCGTCT GGTAAAATAC
GTTAGAACCG GCGTTGAATG CCCGAAAGCA GAAACCTTCA TCGTGCCTAA AAAACCGCTG
AACCTGCTGA AATCCGCATT ACCTGACAAC GACAGCGAAA TTAAAATCGC CTATAGCCAG
AACCACTTCT TCGTAATGCA TGATGGCGCC CAGATGATCT GTCGCCTGAT CGACGCAAGA
TTCCCTGACT ATAAAGTGGT TATTCCAAAA GATAACCCGT ACCGCCTGAC AGTCGCTAAA
AGTGATTTCC AGAACGCGCT GAAACGCGTA AGCGTTTTTG CCAACAAGAG CACCAACCAG
GTAGCCCTGA GCATCACCGG TAGCGAACTG CAACTATCTG CACAGGACGT TGACTTCTCT
TTCGAAGGTA ATGAGCGTAT GAGTTGCCAG TACACCGGCG ACGATATGCA GATCGCTTTC
AACGCGAAGT TCCTGATCGA AATGCTGAAC GCAGCAGAAG GTGATGAAAT CACGATCGAA
TTGTCTACAC CAACCAAAGC AGGTATCCTG AAACCTTCTG AAAAAGAAGA AAACGAAGAC
CTGCTGATGC TGGTAATGCC GCTTATGTTG AATAACTAA
 
Protein sequence
MKFIVSSSTL LKQLQQISGV INSNTVLPIL EDFLFLIDKN ELTVVATDLE TVMKVKLEVE 
AKESGRICIP AKILMDSLKN LPDQPLTFHI DLNSYAVEIT SDNGKYKVMG ENPENFPKEP
AADDTTSFTV SATALVTAIN KTLFAVSNDD LRPAMTGVFF ELTPTSLTFV ATDAHRLVKY
VRTGVECPKA ETFIVPKKPL NLLKSALPDN DSEIKIAYSQ NHFFVMHDGA QMICRLIDAR
FPDYKVVIPK DNPYRLTVAK SDFQNALKRV SVFANKSTNQ VALSITGSEL QLSAQDVDFS
FEGNERMSCQ YTGDDMQIAF NAKFLIEMLN AAEGDEITIE LSTPTKAGIL KPSEKEENED
LLMLVMPLML NN