| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0610 |
|---|
| Symbol | |
|---|
| ID | 8356721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 747958 |
|---|
| End bp | 749319 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962761 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_003120309 |
|---|
| Protein GI | 256419656 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGGA TAATGTTAAC GCTTATTCTC TTAATGGGAA TAGGGGGATA TACCTCCTAT
GCGCAATCGG AACTGTCGTT GCAGGAGTGC CTGAAGTATG CACTCGCTAA TAACCAGCAA
CTGGCACGTA CCCGGATGGA AGAAGATATG GGCCGTTTCA AAACCAGCGA AGTAAGAGCC
AGAGCCCTGC CACAGGTAAA CGCGCAAGGT CAGTATACCA ACAATATTAA GAAACAGGTG
ATCCCCGTTC CCGGCGAATT TGCCGGTGGC GCACCTGGTA CCACCCTCCT GCTGGAAGCT
GGTGTGACGC ACAACGTGAC CGCATCTGGA ACCGTTACGC AGGAAGTGTA TAATCAATCT
GTATTCACCG GCTTAAAAGC AGCAAAAGCA GGCGAAGATT ATTATCGCAT GCAGACAGCG
CAAAGCGAAG AAACCGTTAT CTATAACGTC ACACAGCTGT ATTACAGCAC ATTGGTGTCC
CGTGAGAAAA CAATCGTACT GGATGCCAAT ATCGAGAAGA TGACAAAACT CGTCGAAACA
ACTTCTTCTC AGGTAGAAAA CGGTCTCGCC CGTAAAATAG ACCTGGACCG TATGCGTGTA
AACCTGACTA ACTATAAAAC GCAACGCACA CAAGCACAGA ACCAGTTCCA ACTGCAATCT
AACCAGTTGA AACAGATGAT GGGCATGGCT GTAACCAATC CGATCAATCT TCCTTCCACT
TCTTTTAAAG AAATTGAAAG CAAAGCAACG GCTGCCGATT TTGGAGGCAT GAACCTCGAC
AACAGGATCG AGTATCGCCT CCTGAAAAAA CAGGAAGAAC TACAGGCATT TCAGAAGAAA
GCTTACCTGG CAGAATATTA CCCTTCACTG GCCCTCTCCG GTAACTACTC TTATAATGGT
ATCAGTAACA AGTTTGACAT GTTAAAATCC AAATCCAACG GATCAACTGC CAGTTGGTAT
GATATGGCTG CTGTAAGCCT CACTTTGAAA ATTCCGATTT TCGATGGTTG GGCGCGCCGC
TCCCGTGTAG GTCAGGCAAA TGTAGCCCTG AAACAGATTA AGAAGGATAT GGAGGCCACC
ACCCTCTCCC TGAATACACA ATTCGAAAAC GCAAAACTAC AGGTTCAGAA CAACCTCAGT
ACGATCAAAG CGCAGAAAGA GAACGTAGAC CTGGCCAACG AAGTGTACAA CTCCACCCAG
AATAACTATA ACCTGGGCCT GGCCAATCTG ACAGACCTGC TGGATGCCGA AACATCCCTG
GTCTCTGCTC AGAACAACTA CAATGAAGCT TTATTACAAT ACAAGCTGGC AGAACTGGAT
ATCGTTAAAT CGAACGGTAA TCTCAAAAGC CTGCTGAACT AA
|
|---|
| Protein sequence | MKRIMLTLIL LMGIGGYTSY AQSELSLQEC LKYALANNQQ LARTRMEEDM GRFKTSEVRA
RALPQVNAQG QYTNNIKKQV IPVPGEFAGG APGTTLLLEA GVTHNVTASG TVTQEVYNQS
VFTGLKAAKA GEDYYRMQTA QSEETVIYNV TQLYYSTLVS REKTIVLDAN IEKMTKLVET
TSSQVENGLA RKIDLDRMRV NLTNYKTQRT QAQNQFQLQS NQLKQMMGMA VTNPINLPST
SFKEIESKAT AADFGGMNLD NRIEYRLLKK QEELQAFQKK AYLAEYYPSL ALSGNYSYNG
ISNKFDMLKS KSNGSTASWY DMAAVSLTLK IPIFDGWARR SRVGQANVAL KQIKKDMEAT
TLSLNTQFEN AKLQVQNNLS TIKAQKENVD LANEVYNSTQ NNYNLGLANL TDLLDAETSL
VSAQNNYNEA LLQYKLAELD IVKSNGNLKS LLN
|
|---|
| |