Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0604 |
Symbol | |
ID | 8356715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 739243 |
End bp | 740049 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644962755 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_003120303 |
Protein GI | 256419650 |
COG category | [R] General function prediction only |
COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.710903 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.301955 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAGG TCATTTTTAT CACCGGTGCA TCCACCGGAT TAGGAAAGGT AACAGCGCAA TTATTTGCAG CAAAAGGTTG GACGGTGATC GCTACTATGC GTGATCCTTC ACAGGGCAAA GATCTGGATC ATGCGAATAT CCAGGTATTA CAGCTGGATG TGACAAATCC GGCACAGATT GCAGCAACAG CGAAGAAAGT AGCAGAAAGC GGACCTGTGG ACGTTGTATT CAACAATGCC GGTTACGGAT TAGTAGGCGC ATTAGAGGCA TTGACAGATG AACAGATCGT ACGACAAATG GACACCAACG CGCTGGGCGT AATAAGGGTA ACAAAAGCGT TTGTGCCTTA TCTGCGTGCC CAGGGAAGAG GATTGATTAT TAATACCACT TCCATCGCCG GATTGACAAC ATATCCATTG GGCTCCCTGT ATCATGCCAG TAAATGGGCA ATAGAAGGTT GGAGCGAAAG CATGTCATTT GAACTGGCAT CACATAATAT CCGCATTAAA ACGGTATCTC CGGGCGGTAT CACCACCGAT TTTATGGGCC GCTCCCTGGA CCTGGCGCAG CATGACGCCT ATATGCCTTT GTTCAATAAA CTTATGGCAG GTATGGACGG CGATAACTCG ATCATACATT TCAGTACGCC TGAACAGATC GCAGAAGTTG TGTATGAAGC GGCTACGGAT GATAAAGACC AGCTACGATA CCTGGCCGGA CCAGATGCAA AAGCAGCTTA TGCCCGCCGG GTGGAAATCG GTGCTGAAGC ATTCAGACAG GAAGTTGCAG AAAGATTTGC CGTTTAA
|
Protein sequence | MKKVIFITGA STGLGKVTAQ LFAAKGWTVI ATMRDPSQGK DLDHANIQVL QLDVTNPAQI AATAKKVAES GPVDVVFNNA GYGLVGALEA LTDEQIVRQM DTNALGVIRV TKAFVPYLRA QGRGLIINTT SIAGLTTYPL GSLYHASKWA IEGWSESMSF ELASHNIRIK TVSPGGITTD FMGRSLDLAQ HDAYMPLFNK LMAGMDGDNS IIHFSTPEQI AEVVYEAATD DKDQLRYLAG PDAKAAYARR VEIGAEAFRQ EVAERFAV
|
| |