| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0577 |
|---|
| Symbol | |
|---|
| ID | 8356687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 704521 |
|---|
| End bp | 705216 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962727 |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003120276 |
|---|
| Protein GI | 256419623 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACAC TTATTATTGA CGACAATGCC ATCGCACGAA CTACATTGCT GGAACTTACC
AGCCAGATTA AGGGCGTTGT TGTTGCCTGT GAGTGCGGAA ATGCCATTGA TGCCTATAAC
TATCTCCAGG AAAATACAGT AGACCTGTTG CTGCTGGACA TAGAAATGCC GGGAATGTCC
GGACTTGAAC TGATCAAAAA CATGGGTAAT AAGAAGCCTG TTATCATCTT TACAACTTCC
AAGAAGGAGT ATGCGGTAGA GGCATTTGAG CTCAATGTAG CAGACTATCT CGTCAAACCA
ATTACCCCAG GCCGGTTCCT GCAGGCCATC GAAAAAGCCC GGCAAGTGGT TGAAAGTAAT
AAAGAGGAAA TCCGCTGGGA GAATGATGAA TTTATCTTCA TCCGGGATTC CAATATTGTC
AGAAGACTGA AACTGGAAGA AATTCTCTAC GCCGAGGCTA TGGGCGATTA TGTCAAGTTA
TTCACTGCCA AGAAGTTCTT CGCCGTACAT ACCTCCTTAC GTTCCCTGGA AGAACGCCTG
CCAGCATCTC GTTTTCTGAG AATACACCGT TCCTATATGG TCGCCATCGA TAAAATAGAC
ACCCTGCAGG ACGGAGCCGT CCTCATAGGA GAGAAGAGCC TGCCCGTGGC AGACGCCTAC
CGTAAGGCCC TTAATAAGCG AATGAACGTA CTATAA
|
|---|
| Protein sequence | MITLIIDDNA IARTTLLELT SQIKGVVVAC ECGNAIDAYN YLQENTVDLL LLDIEMPGMS
GLELIKNMGN KKPVIIFTTS KKEYAVEAFE LNVADYLVKP ITPGRFLQAI EKARQVVESN
KEEIRWENDE FIFIRDSNIV RRLKLEEILY AEAMGDYVKL FTAKKFFAVH TSLRSLEERL
PASRFLRIHR SYMVAIDKID TLQDGAVLIG EKSLPVADAY RKALNKRMNV L
|
|---|
| |