| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0523 |
|---|
| Symbol | |
|---|
| ID | 8356629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 620538 |
|---|
| End bp | 621599 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962669 |
|---|
| Product | cytochrome c oxidase subunit II |
|---|
| Protein accession | YP_003120222 |
|---|
| Protein GI | 256419569 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00550922 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGAT ATTTAGCAGT CTTAGTTGTT GTGCTCATAT TCGTAGTCAT CTTCCAGATT
GCGAAGGCCA GCGAGTATGT GTCCATATTG AAGGGAGAAA AGAAAGCGCG TCAGCAATCC
AACCGCGTGA ACGGTTTCCT GTTGATCATC TTCCTGATAC TGGGCCTGGT AGGTGTTTAC
TACTGTAACG ATGCCCTGAA AGGAAAGATT TTCTTTGAAG CAGCGTCTGA ACAGGGTGAG
GGTATCGACA ACATGATCAA ATGGACGTTG TGGATCACAG GTATTGTATT CATCATTACC
CAGATCCTGT TGTTCTGGTT CTCTTTTAAA TATCAGGAGA AAGAAGGTCA ACAAGCCTTT
TACTTCCCTC ATAACAACAA ACTGGAGTTA ATATGGACAG TTATTCCTGC CATAGCGCTC
ACTATCCTGG TGGCTATCGG TTTAAGACAC TGGTTCCGTA TCACTTCCGA TGCACCGAAA
GATGCTGCGG TTGTTGAGAT CACCGGTAAA CAGTTTAACT GGCTGATCCG TTACCCGGGT
AAAGATGGTC AGCTGGGTCG TAAATTCTTC AAGAATATCA ACGACGCTAA CAACCCTGTA
GGTCAGGATT GGGATGATCA GCTGAACAAG GATGATTTCA TGGCAACAGA AATGCACCTG
GTAGTTGGTA AACCGGTAAA ACTGATCATT GGTTCCCGCG ACGTGATCCA TGACGTAGGT
CTGTCTCATT TCCGTCTGAA AATGGATGCT GTTCCAGGTA TTCCTACTAC ATTGTGGTTT
ACACCTAAGT ATACTACCAC TGAGATGAAG GACAAAACCG GCAATCCTGA TTTCGTGTAT
GAAATCTCCT GCGATCAGAT GTGTGGTTCC GGTCACTATT CCATGAAAGC GAATATCGTT
GTGGAAACAC AGGAAGAATT CGACGCATGG ACAGCTAAAC AGGTGGCACA GTACGGTGTA
GCTCACCCGG CAGAAGCGCC GGTAGCCAAA CCAGCAGAAG CACCTGCTGC AGCTACCGAT
ACTACACAGA AAGTAGTAGC GGCTAACGAG GTGAAACCTT AA
|
|---|
| Protein sequence | MSGYLAVLVV VLIFVVIFQI AKASEYVSIL KGEKKARQQS NRVNGFLLII FLILGLVGVY
YCNDALKGKI FFEAASEQGE GIDNMIKWTL WITGIVFIIT QILLFWFSFK YQEKEGQQAF
YFPHNNKLEL IWTVIPAIAL TILVAIGLRH WFRITSDAPK DAAVVEITGK QFNWLIRYPG
KDGQLGRKFF KNINDANNPV GQDWDDQLNK DDFMATEMHL VVGKPVKLII GSRDVIHDVG
LSHFRLKMDA VPGIPTTLWF TPKYTTTEMK DKTGNPDFVY EISCDQMCGS GHYSMKANIV
VETQEEFDAW TAKQVAQYGV AHPAEAPVAK PAEAPAAATD TTQKVVAANE VKP
|
|---|
| |