| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0323 |
|---|
| Symbol | |
|---|
| ID | 8356428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 371461 |
|---|
| End bp | 373884 |
|---|
| Gene Length | 2424 bp |
|---|
| Protein Length | 807 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644962469 |
|---|
| Product | glycoside hydrolase family 3 domain protein |
|---|
| Protein accession | YP_003120023 |
|---|
| Protein GI | 256419370 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000125133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGA AAAAATTCGC CGGTAACCGT AGTCATTTTA TGCTTTGCAT TGCAATGCTC
GGTCTTGGCA CTCAAGCCTT CGCGCAGGTC AAAAAGACCT CCACTACTTC AGTTGTCTAC
AAAAATGCAT CAGCACCGGT TGATGCCAGG GTGAAGGATC TCCTGAAAAG AATGACACTG
GAAGAAAAGG TAGGTCAGCT CTGTACCTTG CTGGGATGGG AGATGTATGA CAAAAAAGGC
GACTCCGTAG GCGTCAGTGA CAAGTTTAAA TCTGTAATGT CCAAAAGGTA TATCGGCAGT
TTCTGGGCTA CGCTGAGGGC CGATCCATGG ACGCAAAAGA CATTAGTGAC CGGCTTATCG
CCTAAACAGG CAGCTATCGC AACCAATGCC CTGCAAAAGT ACATGATGGA AAATACCCGC
CTGGGTATTC CATTACTGCT GGCAGAAGAA TGTCCGCATG GACATATGGC GATCGGTACG
ACCGTCTTCT CAACGTCTAT CGGTCAGGCC AGTACCTGGG ACCCTGCGCT CATTCAGGAA
ATGGCTGGTG CCATTGCAAA AGAAGCACGC GTACAGGGAG CCCATATCGG TTATGGCCCC
GTGCTGGACC TGGTACGTGA ACCACGCTGG TCCAGACTGG AAGAAACTTA CGGGGAAGAT
CCATACCTGA TCAGTCAGAT GGGTATCTCT ATGGTAAAAG GTTTCCAGGG TAATAGTATC
GGCAGTGGCA GCAATGTCAT TTCTACGCTG AAGCATTTTA CCGCTTATGG TTCTCCGGAG
GGTGGTCACA ATGGCGGTAT TGCGCTGACA GGTCTGCGTG ACCTGTACTC TTCCTACCTA
CCTCCATTCC AGGCGGCAGT GAAGGCTGGT GCACTGTCTA TTATGGCTTC TTATAACTCT
ATTGATGGTA TACCGTGCAG CTCAAATAGC TTCCTGTTGA AAGATGTACT GGTAAAACAA
TGGGGCTTCA GCGGCTTCTC TGTATCTGAT CTCGGTGGTA TTCCAGGCGT ACGTTCTACA
CACCATATAG CCGCAACGAT GGAAGAAGCA GCTACGCTGG CAATTAACGC CGGACTGGAT
GCAGACCTGG GTGGTGAAGC ATATGGCGAT GCATTGATCA AAGCTGTGAA CAATAAGAAA
GTGACAATGA CAACCCTGGA TACAGCGGTA GCACATGTAC TCAGACTGAA ATTCACTATG
GGACTTTTCG AAAATCCATA TGTAGATGTG GATGTAGCAG AGAAAACCGT AGGTACAGCA
GCCAACAGGG CGTTATCCAA ACGTGTAGCA GCTGAATCTA TCGTGCTGAT GAAAAACGAG
AACGGCCTGT TGCCATTGCA AAAAACGATC AAAAACCTGG CTGTAATAGG GCCTAACGCA
GATAATATCT ATAACCAGTT AGGTGATTAT ACCGCTCCGC AGCCACAGGA AAAAATAGTA
ACGGTACTGG AAGGTATCAA AGCAAAAGTA TCTGCTGATA CTAAAGTAAC ATATGTCAAA
GGTTGTGCGA TCCGTGACAC CGCACACGCA AATATCAGTG CTGCTGTAGC TGCTGCGCAA
CAGGCAGACG CAGTAGTGAT CGTACTTGGC GGTTCCAGCG CACGTGACTT CGAAACAACC
TTCCAGAGCA CCGGCGCCGC TGAAGTAAAA GCTGCAGAAG TAGCCGTAAG TGATATGGAA
AGTGGCGAGG GTTACGACAG AGTAAGTCTC GACCTGATGG GTTTACAGTC AAGGTTACTG
GAAAGCATCG TCGCAACCGG CAAACCAGTT GTATTGGTAC TGATCGAAGG TCGCCCACTC
AATATTAACT GGGCCGCTAA AAACGTACCT GCCATCGTAA ATGCGTGGTA TCCTGGTCAG
GAAGGTGGTA ACGCTGTCGC GGATGTACTC TTCGGCGATT ACAATCCTGC CGGCCGTTTA
CCTGTATCCA TCCCTAAATC TGTGGGTCAG CTGCCTGTCT ACTACAACTA CAAGAGTGCG
GCAAGACATG ACTATGTTGA AATGGACGCT AAACCACTCT ACAGCTTCGG CCACGGTCTC
AGTTACGCCA GCTTCGAATA CAAAGACCTG CATTCTGATG TACAGGCCAC TGGTAATAAC
CTGAAAGTAA CAGTGAGTTT CAAACTGAAA AACACAAGTA CTGTAGCAGG CGATGAAGTA
GCACAGCTCT ACATCCGTGA CGATGCCAGT TCTGTAGTGA CTGCTGTAAA ACAACTGAAG
AAATTCCAGC GTGTACACCT GGCGCCAGGC GAACAGAAAG AAATTAAATT CGAACTGTCT
CCTGATGACC TCAGACTACT CAATGTTGAT ATGAAATGGG TGGTTGAACC AGGTACTTTT
ACAATGATGA TAGGAGCTTC TTCTGAAGAT ATCCGCCTGA ATGGAAAATT TGAAGTAAAA
CAACAGGTGG CGTGTAAATA CTGA
|
|---|
| Protein sequence | MKMKKFAGNR SHFMLCIAML GLGTQAFAQV KKTSTTSVVY KNASAPVDAR VKDLLKRMTL
EEKVGQLCTL LGWEMYDKKG DSVGVSDKFK SVMSKRYIGS FWATLRADPW TQKTLVTGLS
PKQAAIATNA LQKYMMENTR LGIPLLLAEE CPHGHMAIGT TVFSTSIGQA STWDPALIQE
MAGAIAKEAR VQGAHIGYGP VLDLVREPRW SRLEETYGED PYLISQMGIS MVKGFQGNSI
GSGSNVISTL KHFTAYGSPE GGHNGGIALT GLRDLYSSYL PPFQAAVKAG ALSIMASYNS
IDGIPCSSNS FLLKDVLVKQ WGFSGFSVSD LGGIPGVRST HHIAATMEEA ATLAINAGLD
ADLGGEAYGD ALIKAVNNKK VTMTTLDTAV AHVLRLKFTM GLFENPYVDV DVAEKTVGTA
ANRALSKRVA AESIVLMKNE NGLLPLQKTI KNLAVIGPNA DNIYNQLGDY TAPQPQEKIV
TVLEGIKAKV SADTKVTYVK GCAIRDTAHA NISAAVAAAQ QADAVVIVLG GSSARDFETT
FQSTGAAEVK AAEVAVSDME SGEGYDRVSL DLMGLQSRLL ESIVATGKPV VLVLIEGRPL
NINWAAKNVP AIVNAWYPGQ EGGNAVADVL FGDYNPAGRL PVSIPKSVGQ LPVYYNYKSA
ARHDYVEMDA KPLYSFGHGL SYASFEYKDL HSDVQATGNN LKVTVSFKLK NTSTVAGDEV
AQLYIRDDAS SVVTAVKQLK KFQRVHLAPG EQKEIKFELS PDDLRLLNVD MKWVVEPGTF
TMMIGASSED IRLNGKFEVK QQVACKY
|
|---|
| |