| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0233 |
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| Symbol | |
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| ID | 8356337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 279777 |
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| End bp | 282281 |
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| Gene Length | 2505 bp |
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| Protein Length | 834 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644962379 |
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| Product | putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase |
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| Protein accession | YP_003119934 |
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| Protein GI | 256419281 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0787] Alanine racemase |
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| TIGRFAM ID | [TIGR00492] alanine racemase
[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTATAACG CAGAAAGTAT CAGCAAAGTG CTGAAAGGTG AACTATTGCA GCAGACGGGT
AATCCGGAGA TTGAACACAT TTTGCTGGAC AGCCGGAAAC TCAGCTTTCC TGAAACATCT
CTTTTTATAC CACTGGTAAG CAGCCGTCGT AATGCACACC AGTATATACA GGAGCTGTAC
GAAAAAGGTG TTTCCAATTT CATTGTAAGT GAACCTGTGC CAGAGGGGAA ATATCCGAAA
GCCAACATCA TATTAGTAAA AGACACAATG CAGGCACTGC ACGCGCTGGT AGCTTATCAC
CGGCAGCAGT TCCATATACC TGTGATCGGT ATTACCGGCA GTAACGGTAA AACCATCGTC
AAAGAATGGC TGTATCAGCT ATTGGAGAAA GATTATAATA TCGTCCGCAG TCCTAAAAGC
TATAATTCTC AGATCGGCGT TCCACTCTCT GTATGGCAGA TGAAACCGGA GCACCAGCTG
GCTATTTTTG AAGCAGGCAT TTCCCAACCA GGGGAAATGG AGCATCTTGA AAAGATTATC
CGCCCGAACA TCGGCATTTT TACCAATATC GGAGAAGCGC ATAATGAGGG CTTCCTGAAC
ATCCGTCAGA AGATCAATGA AAAGCTGGTT TTGTTTTCCA AAAGCGACCT GCTGATCTAT
TCCAAGGACT ATCTCGCACT GAACGAATGT GTATTGAATT TTCACAACCT GGTAGGCAAG
AAAGATAACC ATGAAGGTGG TTTACAGCTG TTTACCTGGT CCCGTAAAAC GGAAGCAGAT
CTTCGCATTA TCAGCGTTGA TAAAAGTGAG CATCATTCCC GTATTGACGC ATTATATCAG
ACCATTCCCA TCCACATCAA TATTCCCTTT GTAGATGAAG GTTCAGTGGA GAATGCCATA
CATTGCTGGG CGCTGATGCT GCACCTGGGT ATGGAACATT CTGTAATACA ACAACGGATG
GACCAGCTGG GCAATATAGC CATGCGCCTG GAACTGAAAC AGGGGATCAA CAACTGCTCT
GTCATCAATG ACAGTTATAA TTCCGATCTT GGCTCACTGG CCATTGCACT GGAATTCCTG
CAACAACAAC AGCAGCATCC TACTCGTACG GTCATCCTCA GTGACATCCT GCAGAGTGGC
AAAAGCGATG CGTCTTTGTA CGAGGAAGTG GCTAGTCTGC TCCAGCAGAA AGGCATCAAT
AAAGTGATCG GTATCGGGAA AAATATTTTC AGAGAGAAAA AAAGCTTTCA ACAGATCACT
GGTCTGAAAA GCAGTTTTTT CCTGACGACA GAAGAATTTA TTCAGCAATT CAATCAGCAG
GATTTTCAGC ATGAAACCAT CCTCCTGAAA GGCGCGCGTA TATTTGAATT TGAGCGGATT
GGTAAGCTGT TGGAACAGAA GGTACACCAG ACAATCCTGG AGATCAATCT GAGTGCTGTA
ACGCACAACG TAAAGCAATA TCAGTCGTTG CTGAAGCCGG GTACCAAACT GATGGCCATG
GTGAAAGCAT TCTCTTATGG CAGCGGAAGT TTTGAAATTG CAAACCTATT GCAGTTCCAT
GGTGTAGATT ACCTCGCCGT TGCTTATGCT GATGAAGGTG TGGATCTGAG GCGAACAGGC
ATTACGATGC CGATTATGGT CATGAATCCT GAACCCAGTT CTTTTGACGC TATCCTCCAA
TGGAATCTGG AACCCGAAAT ATACTCCCTC CACCTGTTAA AACAGTTTGA AGAAGAAGTA
CAGCTGGCCG GTAAAACCGG TTTCCCTGTA CACATTAAAC TGGATACAGG TATGCACAGG
CTGGGTTTTG AGAAGAAAGA CATCCCCGAG CTGGCCCGTT TACTGAGTGA TAATATCTAT
CTGAAAGTAA ATTCTGTGTT CAGTCACCTG GCCGCCAGTG AAGATCCGGC AATGGACGCC
TTCACCAAAC AGCAGGGACA GTTATTCTTC GAAATGAGCC ACGAACTGCA AAAGGCATTG
GGCTATACAG TGATCAGGCA TATTGCAAAC AGCGCAGCTA TCGAGCGTCA TCCTGACCTC
CAGCTGGATA TGGTCAGACT GGGTATCGGC ATGTATGGCA TAGACAGCGC CAACAAGATA
CAGGACCAGT TACGTCCGGC CAGTACGCTG AAAACAACGG TTGCACAGGT AAAACACCTG
TCCACCGGCG ATACAGTAGG TTACGGGGCC AAATGGGTGG CGAAAGGGCC ATCTGTGACG
GCAACAGTAC GCATCGGGTA TGCTGACGGC TATCCCCGCC GCCTGAGCAA CGGAAAGGGA
AAGATGCTCG TACGCGGGCA ACTGGCCCCT GTGGCAGGTG TTGTGGCGAT GGATATGCTG
ATGCTGGATG TAACCAATAT TCCGGAAGTG GCAGAAGGAG ACGAAGTGAT CGTATTTGGC
AATGAGCTGC CGGTACAGCA GGTATCTGCC TGGGCAGACA CCATTCCTTA TGAAATATTA
ACAGGAATTT CGCAGCGGGT AAAGCGGGTA TATTTCGAGG AGTGA
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| Protein sequence | MYNAESISKV LKGELLQQTG NPEIEHILLD SRKLSFPETS LFIPLVSSRR NAHQYIQELY
EKGVSNFIVS EPVPEGKYPK ANIILVKDTM QALHALVAYH RQQFHIPVIG ITGSNGKTIV
KEWLYQLLEK DYNIVRSPKS YNSQIGVPLS VWQMKPEHQL AIFEAGISQP GEMEHLEKII
RPNIGIFTNI GEAHNEGFLN IRQKINEKLV LFSKSDLLIY SKDYLALNEC VLNFHNLVGK
KDNHEGGLQL FTWSRKTEAD LRIISVDKSE HHSRIDALYQ TIPIHINIPF VDEGSVENAI
HCWALMLHLG MEHSVIQQRM DQLGNIAMRL ELKQGINNCS VINDSYNSDL GSLAIALEFL
QQQQQHPTRT VILSDILQSG KSDASLYEEV ASLLQQKGIN KVIGIGKNIF REKKSFQQIT
GLKSSFFLTT EEFIQQFNQQ DFQHETILLK GARIFEFERI GKLLEQKVHQ TILEINLSAV
THNVKQYQSL LKPGTKLMAM VKAFSYGSGS FEIANLLQFH GVDYLAVAYA DEGVDLRRTG
ITMPIMVMNP EPSSFDAILQ WNLEPEIYSL HLLKQFEEEV QLAGKTGFPV HIKLDTGMHR
LGFEKKDIPE LARLLSDNIY LKVNSVFSHL AASEDPAMDA FTKQQGQLFF EMSHELQKAL
GYTVIRHIAN SAAIERHPDL QLDMVRLGIG MYGIDSANKI QDQLRPASTL KTTVAQVKHL
STGDTVGYGA KWVAKGPSVT ATVRIGYADG YPRRLSNGKG KMLVRGQLAP VAGVVAMDML
MLDVTNIPEV AEGDEVIVFG NELPVQQVSA WADTIPYEIL TGISQRVKRV YFEE
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