Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0164 |
Symbol | |
ID | 8356264 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 202942 |
End bp | 205335 |
Gene Length | 2394 bp |
Protein Length | 797 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644962307 |
Product | penicillin-binding protein 1C |
Protein accession | YP_003119866 |
Protein GI | 256419213 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTCCCT GGTTCCGAAA ACGTAAATGG TGGCTCATTG CCGCAACACT ACTCCTTATA CTCTACATCT TTTGTATCCC TTCCCGTCTT TTCACCACAC CGACCTCATT TGTAATTGAA GACAGTAACG GCGAATTACT AAGCGCAACC ATCGCTACAG ACGGGCAATG GCGATTCCCG GCTGACAAAC GGGTACCTGA AAAATTTGCT GCCTGTATTG TAGCGTATGA AGACAAACGC TTCTATCATC ACTGGGGCGT AGATCTACTG GCATTGGGAC GTGCGATCAG ACAGAACCTC AGCAGTAAAA AGGTAGTGAG TGGCGGTAGT ACGCTCACCA TGCAGGTGAT ACGCCTCTCC CGCAATAAAG AGCGTAATAT CTTTCAGAAG CTGATTGAAG CGGTGATGGC AACCAGGATG GAGTTTTCCT ATTCCAAAAA AAGTATTCTC TCCTTATACG CAGGTAATGC ACCTTTCGGC GGAAACGTCG TAGGACTGGA AGCTGCTTCC TGGCGATACT ATGGTCGTAG TGCGACACAA TTGTCATGGG GGGAAACGGC GGCGTTGGCG GTATTGCCCA ATAGTCCGGC CCTGGTACAC CCCGGTCGTA ACCGGCAGAT CTTATTACGC AAAAGGAATC AGTTACTGGA AAGGTTATGG CATAATGAAA CCATTGATAG TGTAACCTGT CAGCTGGCTG AACTGGAACC ATTACCCGAT CAGCCCAAAG CATTGCCACA GGATGCACCT CATCTGCTGG ATCGTTTCCG CAGAGATTAT CCTGCACAAA AAACCAGGGA CGAAAAAGCC GTAACACGTA TCCAGACTAC ATTAGATGCC GCACTTCAGC GGAATGTCAG CAATATCGTA GAACGATATC ATGCTGTTTA TAAAGCCAAT GGCATCAACA ATGCAGCCGC GGTTGTACTG GATGTGGAAA CCGGTGATGC ATTAGCCTAT GTAGGAAATA TTTATCATCC CGAAGATCCG GAGACGGAAA GCCATGTTGA TATTATACAG GCGCCCCGTA GTCCGGGTAG TACACTGAAA CCGATTCTGT ATGCGGCCAT GCTCACGGAT GGGATTATAC TACCGCATTC ACTGGTACCG GATATTCCTA CACAGATAGC CGGATATACA CCACAGAACT TTGACCTGGG TTATGACGGC GCTGTACCTG CCAGTAAGGC ACTGGCTCGT TCATTAAACA TACCGGCAGT CAGAATGCTG CAACAATACA GGTATGAAAG AATGCACGCA TTGCTAAAGA AACTGGGTAT TACAACATTA AATCAACCAC CTGACCACTA TGGTCTGTCA CTGATATTAG GCGGAGGGGA ATCTACCCTC TGGGAAATGA CAGGTATGTA TGCCAGTCTG GCCCGCACAC TGCTGCATCT TGAGCAATAC AATGGCAAGT ATGACGCAGA CGACATCCAT GCACCGAACT ATCGTAAAGA TGCTAAACGG GTGTCAAAAT TTGCCCCTTC TGCCACAGGC GTATTAGATG CAGGCGCGAT CTGGTATACC TTTCAGGCAA TGGAAGAGGT AATGCGGCCG GGAGAGGAGA TGTTATGGCA ACAATTCTCC TCCTCACAGC GTATTGCATG GAAAACAGGT ACCAGTTTTG GTTTCAGGGA TGGATGGGCA ATCGGTGTGA CGCCACAATA CATTGTCGGT GTATGGGTGG GCAATGCCGA TGGAGAAGGA AGACCAGGGC TGGTTGGTGT GTCTACTGCT GCACCGATTA TGTTTGATGT ATTCAGACTC CTCCATACAG GTAGCTGGTT CAATACTCCA TACGATAAGC TGCGGAAGAT TGAAGTATGC CGGCAAAGCG GTTACAGGGC CAGCGATCTT TGTCCGGAGA AAGATTCTAT CGCCGTTCCT GCCAACGGTC TTCGTTCAGG ACTCTGTCCT TATCATCAGC TGGTGCACCT GGATCATAGC GGTCAATTGC GCGTGACAGC CGACTGTGAA TCCCCTTCCC AGATGCAGCA TGTACCCTGG TTTATATTAC CGCCTGCCAT GGAATTTTAC TATCGCACCA AACATAATTA TCTGCCTTTA CCCCCTTATA AACAGGAATG TCTGGCTACC CTCAGTCAGG ATAAAGCACC GATGGAGGTG ATCTATCCGA GACCCAATGC GCGTATTTAT GTACCAATAG AGATAGATGG TAAGCCGGGA GAGGCCGTAT TTACAGCTAC ACACCGCAAT ACGGCAGAAA AGATCTTCTG GCATATGGAT GACAGCTACC TGGGAACGAC GCAGGAATTC CATCAGATGG CTTTACATCC ACCAGCAGGT AAACACACCC TTACACTCGT AGATGAGCAG GGCGTGCAGA TACATGTGCC ATTTGAGATA CTGGAGAAAA AAGGTGAAGA CTAA
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Protein sequence | MSPWFRKRKW WLIAATLLLI LYIFCIPSRL FTTPTSFVIE DSNGELLSAT IATDGQWRFP ADKRVPEKFA ACIVAYEDKR FYHHWGVDLL ALGRAIRQNL SSKKVVSGGS TLTMQVIRLS RNKERNIFQK LIEAVMATRM EFSYSKKSIL SLYAGNAPFG GNVVGLEAAS WRYYGRSATQ LSWGETAALA VLPNSPALVH PGRNRQILLR KRNQLLERLW HNETIDSVTC QLAELEPLPD QPKALPQDAP HLLDRFRRDY PAQKTRDEKA VTRIQTTLDA ALQRNVSNIV ERYHAVYKAN GINNAAAVVL DVETGDALAY VGNIYHPEDP ETESHVDIIQ APRSPGSTLK PILYAAMLTD GIILPHSLVP DIPTQIAGYT PQNFDLGYDG AVPASKALAR SLNIPAVRML QQYRYERMHA LLKKLGITTL NQPPDHYGLS LILGGGESTL WEMTGMYASL ARTLLHLEQY NGKYDADDIH APNYRKDAKR VSKFAPSATG VLDAGAIWYT FQAMEEVMRP GEEMLWQQFS SSQRIAWKTG TSFGFRDGWA IGVTPQYIVG VWVGNADGEG RPGLVGVSTA APIMFDVFRL LHTGSWFNTP YDKLRKIEVC RQSGYRASDL CPEKDSIAVP ANGLRSGLCP YHQLVHLDHS GQLRVTADCE SPSQMQHVPW FILPPAMEFY YRTKHNYLPL PPYKQECLAT LSQDKAPMEV IYPRPNARIY VPIEIDGKPG EAVFTATHRN TAEKIFWHMD DSYLGTTQEF HQMALHPPAG KHTLTLVDEQ GVQIHVPFEI LEKKGED
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