| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0095 |
|---|
| Symbol | |
|---|
| ID | 8356192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 113747 |
|---|
| End bp | 116581 |
|---|
| Gene Length | 2835 bp |
|---|
| Protein Length | 944 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644962239 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003119801 |
|---|
| Protein GI | 256419148 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0167814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAAGCCA TTCTGAAATA TCTGCTTACC ATATGGCTGA CTGTGTTGTG TGTGTCTGTA
AAGGCACAGC AGAAGGATTC ATTGCCCGTC GGTAATGTAT CAGGCATCAC CTTTGACTCT
ACACACAATT ATGTGCTGAA AAATGCCAGT ATAACGATCT ATAACATTAG AAACGAACTG
CTTGCATATG GTCTTAGTAA TGCAGAAGGT GCGTTTTCCC TACCCAAACT CCCCCTGGGA
CAAAACTTTA AACTGGTCAT CTCTTATCTC GGCTATGCCA CATGGACTAA AACCCTGCGG
CTTGACACGG AAAATCCCAT AAGCGACCTG CATTATGTCA ATCTGCTGCC GGAAAATACT
GCGCTGAGCG AAATCGTCGT CACTGCTCCC CCTCCCGTAC GCATGAATGG CGATACGCTG
GAGTTCAATG CAGGCGCCTT CACTTTGGAT AAAAACGCAG TTGCAGAAGA ACTGCTGATC
CGCCTGCCCG GTGTCGTTGT GTGGTCGGAT GGAGCGATTA CCGTTAATGG AAAGACCGTT
TCCCGCGTAC TGGTTGACGG AAAGCCGTTT TTTGGCAACG AGGCTGCTAT TGCCACACAA
AACATCCCCA AAAACGCCAT TGAAAAGATA CAGGTCTATC AGAAGACGAG GAAGGAGGAG
CAGGTCAACC CTCATGACTC CATTCCCGAA ATAAATATTC AGCTAAAGGA TGATATGCAT
GAAGGACATT TTGGCGAACT ATCAGCCGGA TACGGCTCCC GAAAGACCTA TGAAGGCAGC
ATGAATATCA ACTTCTTTTC GCCTCGTAAT CAGTGGGGAC TGTTTAGTAT TGCCAATAAT
GTGAATAAAA CAGCAGGTGG TATTACAGAC CTGTTATTAA ATAGTGCTTT TAAAAGTCTG
AAAGGGGATA TTGATAATCA ACCGGACTTT GGTAAAGGCG GTTTAAATCA GTCCCTGGGC
GCCGGCGTAT TCTATCACCA CGACTTTAAA CATGATGGTC GCGGACCAGC CTACCTGCCG
GCTGAAATTG GCGCTGATTA TTTTCTCAAA AGAGATAAAA ATAACCACCT TACTGATATC
AGTAGTCTGA CCTCCCTGGG GCCGGATAGT GCCATCCTTC AGAAAAGCAA TGTCACCGTC
AAAGACAACC AGATCAATCA ACAGCTGGAT ATTCACCAGA TAGAATTGCT GGCGAAAAAG
AACGTAGAAC TGGCCATTAA GCCTTCTCTT GCTTACACGA CCTATGACAA TGTCACCAGT
AGCCATGCCA GCAGCTTTTC TACTAAAACA GGATTGCAGA GTATGAGCAG TGTGGAATCT
GAAAGCCATG CCCGGAATAC TCACCTGGCC GTCAATGCGA GGTATTCTCA TGATCTGGAT
AATAATACCT CCTTATCAAT GGCCTATTCT ATCGATTATA ACCGCGACGA AAGCAATAGG
TATAGTAAGT CCATTTTTAC CTCCTTTGCG AAGGCCAGCG ACAATCAGCA CGTAGAACGA
AAATCGCTCA ACACAAAATC TGATGTGAGA CACCGGATGG ACGCTGCCTG GGGTAACATC
GCTCCACTGC TGTTCGGCCG TGGGAATTTC CTTTCTACCG TACATATCGA TGTGGAAAAT
GCACTGGAAT ATTCCTCACA GGTCGCGGAC AATAGCGCCT TGGACAACGA CACGGCTGCA
AAGAATTTCA TACATGACCC CTATCTCACC TATCGTAGCA GATACAGGGT GGTCAACGAA
AACCCGGCTA TCAAGTTTTC CCGGACCTTC GAACGTACAC GGGCCGATAA GTATACCAAG
TCATTGTCTG TTTTCCTAAA CCTGCAGGAA CAGATCTATT TACAGCAGAA CACCTCTTCT
CATACCTTCC AGCAGTTTAA CAGGAACTAC CAGCGCTTCG TGCCTTCGGT TAGTTTATCG
TATGTAAATG AACAGATAAG CCGTTTCAGC AACAGCTATC ACCTGGCCTT TAAACGCTCC
TTCGAGTACG CGACCGTGGA TATGTTATAT CCTATTGTGG ATAGTACCAA TTTCTATTAC
CTGACAGAAG GCAATCCCGA CTTAGCGCCC GCTGAGACAA AAGAGCTTAA TTTTCGTTAC
AGTCATAACA GCAACCGTAT TGAATACGGT CTTGTAGTGA CCGCCATTAC TACAGATAAT
TTCTTTGCAG GTAGTTCCTA TATCAATGAA AATGGTACCA CTATCACCAA AAACATCAAT
CTCGATGGCC GGCGTAGTAT CGAACTGCGG GGAGAAGTAC AGAAACCCCT GAAACTGAAA
AACGGGGATC AGCTACAGTT CGTGGAAGAA CTTTCCTTTA TCAGGTCACA TAGTCCGAAT
TACCTCGTGC GGAATGATGA ACAGCAGGAT GTGATGAATG TCTCTTATGC AAGTCAGCTG
AAAAATAAAA TCAGCATATA CTTTATCCAC CTGGATAAAC TGGCCATTAA TCTCTCTCAA
AACGCCAGTT ATTACTTGTC CAGACAGCGT GGGTTGAATG ACGCCCGCAT CAGCTCTTAC
GAATACAACA CTTCATTGAG CGGTGGTTAT ACGCCTACGA AGCGGTTTAC CATCAGCAGT
AATGTTACCA GTAATATGGT TGTTTCCTCC GCTGCCGAAC AGGTTATTTT TACTATCTGG
AATCTGAGTG CTGCCTACCG GCTCTTACCA GGTAATAACC TGGAGCTGAA ATTCTCCGCG
TTAGACCTGC TGGGACAGAA CCGGAGTATC AATAACTACG GCAACAATTA TGTATTGACA
CAAGAATCAC ATAATGTGCT CAAGCAGTAT TTTATGCTCA CACTCACTTA CTTTCCAAGG
AAATTCGGGC GCTGA
|
|---|
| Protein sequence | MKAILKYLLT IWLTVLCVSV KAQQKDSLPV GNVSGITFDS THNYVLKNAS ITIYNIRNEL
LAYGLSNAEG AFSLPKLPLG QNFKLVISYL GYATWTKTLR LDTENPISDL HYVNLLPENT
ALSEIVVTAP PPVRMNGDTL EFNAGAFTLD KNAVAEELLI RLPGVVVWSD GAITVNGKTV
SRVLVDGKPF FGNEAAIATQ NIPKNAIEKI QVYQKTRKEE QVNPHDSIPE INIQLKDDMH
EGHFGELSAG YGSRKTYEGS MNINFFSPRN QWGLFSIANN VNKTAGGITD LLLNSAFKSL
KGDIDNQPDF GKGGLNQSLG AGVFYHHDFK HDGRGPAYLP AEIGADYFLK RDKNNHLTDI
SSLTSLGPDS AILQKSNVTV KDNQINQQLD IHQIELLAKK NVELAIKPSL AYTTYDNVTS
SHASSFSTKT GLQSMSSVES ESHARNTHLA VNARYSHDLD NNTSLSMAYS IDYNRDESNR
YSKSIFTSFA KASDNQHVER KSLNTKSDVR HRMDAAWGNI APLLFGRGNF LSTVHIDVEN
ALEYSSQVAD NSALDNDTAA KNFIHDPYLT YRSRYRVVNE NPAIKFSRTF ERTRADKYTK
SLSVFLNLQE QIYLQQNTSS HTFQQFNRNY QRFVPSVSLS YVNEQISRFS NSYHLAFKRS
FEYATVDMLY PIVDSTNFYY LTEGNPDLAP AETKELNFRY SHNSNRIEYG LVVTAITTDN
FFAGSSYINE NGTTITKNIN LDGRRSIELR GEVQKPLKLK NGDQLQFVEE LSFIRSHSPN
YLVRNDEQQD VMNVSYASQL KNKISIYFIH LDKLAINLSQ NASYYLSRQR GLNDARISSY
EYNTSLSGGY TPTKRFTISS NVTSNMVVSS AAEQVIFTIW NLSAAYRLLP GNNLELKFSA
LDLLGQNRSI NNYGNNYVLT QESHNVLKQY FMLTLTYFPR KFGR
|
|---|
| |