Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0093 |
Symbol | |
ID | 8356190 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 111040 |
End bp | 113235 |
Gene Length | 2196 bp |
Protein Length | 731 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644962238 |
Product | group II decarboxylase family protein |
Protein accession | YP_003119800 |
Protein GI | 256419147 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAAC CTTCTAATTC GAAGAAACTA TTTGCACGTC AGCTGCAACA ACAACAAAAC GAGATTCTAT CCAAACTACG CGTCAAAGGC ACTGGTTCTG ATGACCTGGC CGGCTGGTTC CTTGGCCCTA AAGCAGAAAA CACGGAGTTA TTACACCATT TGATCCAGCG TGCTATGGAC AATCACTGTA ATGACCGTAA AAACCTGTAT CCTAATGACC CGGTGTATGT AACAGAAGAA ATGAAACAGA CACCTGAATA TCAGGAAACA GTCAGGGTAT TACAACATAA ACTGGACGTG CTCCTGGAAG AATTAAAAGG CTCCGTACCT TTCTGGAGCT ATCGCTGGCA GTCGCATATG AACTGGGATA CCACCTTACC TAGTATGGTT GGTTACTTCG GCACGATGTT GTACAATCCG AATAACGTGG CAGCAGAAGC ATCACCGGTA ACAACGGTAC TGGAGATGAT CGTTGGGGAT GAACTGTGTA AGATGCTTGG TTACAACATC ACTGATAATA ATCCGGCTAT ACCGAAAGCC TGGGGGCATA TTACCTGTGA TGGTTCTATT GCCAATAACG AGGCGATGTG GGCAGCCCGT AACCTGAAAT ATTATTCCAT CAGTCTCGCC GCCGCTATCA AGGATACGCC TGAATTATCC CAGGCCGGTG CCCTGCAATT AACACTGGCC AATGGTACTA TTACCACAAT TGGCGCAGCC AGCAGCTGGG ATCTGCTGAA TCTTTCCGTG GATGAAGTAT TAAGTATTCC CGACAGACTA CAATCTGAGT TCAATATCAA TCTCGATCTG CTCACACAGA TACTGAACAA CTACAGTATA CAGAACATCG GATTTGATGG TATCAATAAA TTCCTGGATA GTGGCATTCA GTCACCATCT ATGATGGCAG CTTCTACCTG TCACTATTCC TGGCCTAAAT CAGCGGCGGT ACTGGGTCTG GGGGCTAATA ACCTGATCAA GGTATATGTA GATGAAAATG CGCGGCTGCA TATTGGTCGA CTGAGAGAAG AATTGCAAAA ATCACTGGAC AGGAAAAGTC CGGTACTGAT GGTGGTAGCG GTAATCGGCA GCACAGAAGA AAGTGCAGTT GATCCGCTGA AAGACATCGT GGCTGTAAGA GAAGAGTTCA GACAAAAAGG ACTGAACTTC GTCATACACG GCGATGCTGC ATGGGGTGGA TATTTCGCGT CTATACTGAG ACAACCGGAA CACGAGGTAC TTTCCAAACG CGCATTATTG TATACGCCTA CGCTCACCAT GAATGACTAT GTCACCGAGC AGTATGCGAA TATTCAGGAG TGCGACTCTA TTACGATCGA TCCGCATAAA GCGGGATATA TTCCTTATCC TGCCGGTGGG CTGTGTTATA AAAACGGCGC TATGCGTAAC CTGGTAGCCT TTACGGCGCC GGTGGTATAT CATGGGGGCA TTGATCCTAC AGTGGGCATC TACGGATTGG AAGGCTCCAA ACCTGGCGCC GCTGCAGCTG CTGCTTATCT GAGTCACCAG GTGATTCCGC TGGACCAGAG TGGTTACGGA CAGATACTTG GTAAATGCTT ATTCAACAGT AAACGCCTGT ACAGTGCCTT TATTACGATG GCAGAACCGG ATGATCCGTT TATCATTGTA CCATTCCAGC GTCTGCCGGC TGAAAAGCAC GGGGAAGATC CGCAGAAAAT AAAGGAACAA TATGATTTCA TCAAAAACGA GATCGTTCCA AAAACCAATG AGGAGATCAT GTCCAATGCA GAAGCTGTAG AATTATTGCC GGAACTGGGC AGTGATCAGA TCATCATTAC CTACACCTTC AACTTCAAGG AAAATGGTGT ATTAAACAAA GATGTCGACA AACTGAATGA GCTGAACCTG AACATCTTCC AGGCACTGAG TCTTTCTCCG GGAGAACATG ACCATCCGTC TAAAACACCG ATGTATGTCA CACAGTCACA GTTTGACAAT GACTCTTATG GTAAATCATT TGTGAACAGC TATAAGGAAA GACTGGGCAT ATCTACAGAT AATGATGAAC CGGTGAATAT ACTGATCTCC ACCACCATGA ATCCATGGTT GACAGATACC GCAGATGGTA ACTTCATTCC TGAACTGGTG AAAGCATTAC GTCAGACGGT GCTGGAACAG GTTGAAAAAG TAGTAGGAGC AATGGAACTC GCATAG
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Protein sequence | MKQPSNSKKL FARQLQQQQN EILSKLRVKG TGSDDLAGWF LGPKAENTEL LHHLIQRAMD NHCNDRKNLY PNDPVYVTEE MKQTPEYQET VRVLQHKLDV LLEELKGSVP FWSYRWQSHM NWDTTLPSMV GYFGTMLYNP NNVAAEASPV TTVLEMIVGD ELCKMLGYNI TDNNPAIPKA WGHITCDGSI ANNEAMWAAR NLKYYSISLA AAIKDTPELS QAGALQLTLA NGTITTIGAA SSWDLLNLSV DEVLSIPDRL QSEFNINLDL LTQILNNYSI QNIGFDGINK FLDSGIQSPS MMAASTCHYS WPKSAAVLGL GANNLIKVYV DENARLHIGR LREELQKSLD RKSPVLMVVA VIGSTEESAV DPLKDIVAVR EEFRQKGLNF VIHGDAAWGG YFASILRQPE HEVLSKRALL YTPTLTMNDY VTEQYANIQE CDSITIDPHK AGYIPYPAGG LCYKNGAMRN LVAFTAPVVY HGGIDPTVGI YGLEGSKPGA AAAAAYLSHQ VIPLDQSGYG QILGKCLFNS KRLYSAFITM AEPDDPFIIV PFQRLPAEKH GEDPQKIKEQ YDFIKNEIVP KTNEEIMSNA EAVELLPELG SDQIIITYTF NFKENGVLNK DVDKLNELNL NIFQALSLSP GEHDHPSKTP MYVTQSQFDN DSYGKSFVNS YKERLGISTD NDEPVNILIS TTMNPWLTDT ADGNFIPELV KALRQTVLEQ VEKVVGAMEL A
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