Gene Cpin_0093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0093 
Symbol 
ID8356190 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp111040 
End bp113235 
Gene Length2196 bp 
Protein Length731 aa 
Translation table11 
GC content46% 
IMG OID644962238 
Productgroup II decarboxylase family protein 
Protein accessionYP_003119800 
Protein GI256419147 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0076] Glutamate decarboxylase and related PLP-dependent proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAAC CTTCTAATTC GAAGAAACTA TTTGCACGTC AGCTGCAACA ACAACAAAAC 
GAGATTCTAT CCAAACTACG CGTCAAAGGC ACTGGTTCTG ATGACCTGGC CGGCTGGTTC
CTTGGCCCTA AAGCAGAAAA CACGGAGTTA TTACACCATT TGATCCAGCG TGCTATGGAC
AATCACTGTA ATGACCGTAA AAACCTGTAT CCTAATGACC CGGTGTATGT AACAGAAGAA
ATGAAACAGA CACCTGAATA TCAGGAAACA GTCAGGGTAT TACAACATAA ACTGGACGTG
CTCCTGGAAG AATTAAAAGG CTCCGTACCT TTCTGGAGCT ATCGCTGGCA GTCGCATATG
AACTGGGATA CCACCTTACC TAGTATGGTT GGTTACTTCG GCACGATGTT GTACAATCCG
AATAACGTGG CAGCAGAAGC ATCACCGGTA ACAACGGTAC TGGAGATGAT CGTTGGGGAT
GAACTGTGTA AGATGCTTGG TTACAACATC ACTGATAATA ATCCGGCTAT ACCGAAAGCC
TGGGGGCATA TTACCTGTGA TGGTTCTATT GCCAATAACG AGGCGATGTG GGCAGCCCGT
AACCTGAAAT ATTATTCCAT CAGTCTCGCC GCCGCTATCA AGGATACGCC TGAATTATCC
CAGGCCGGTG CCCTGCAATT AACACTGGCC AATGGTACTA TTACCACAAT TGGCGCAGCC
AGCAGCTGGG ATCTGCTGAA TCTTTCCGTG GATGAAGTAT TAAGTATTCC CGACAGACTA
CAATCTGAGT TCAATATCAA TCTCGATCTG CTCACACAGA TACTGAACAA CTACAGTATA
CAGAACATCG GATTTGATGG TATCAATAAA TTCCTGGATA GTGGCATTCA GTCACCATCT
ATGATGGCAG CTTCTACCTG TCACTATTCC TGGCCTAAAT CAGCGGCGGT ACTGGGTCTG
GGGGCTAATA ACCTGATCAA GGTATATGTA GATGAAAATG CGCGGCTGCA TATTGGTCGA
CTGAGAGAAG AATTGCAAAA ATCACTGGAC AGGAAAAGTC CGGTACTGAT GGTGGTAGCG
GTAATCGGCA GCACAGAAGA AAGTGCAGTT GATCCGCTGA AAGACATCGT GGCTGTAAGA
GAAGAGTTCA GACAAAAAGG ACTGAACTTC GTCATACACG GCGATGCTGC ATGGGGTGGA
TATTTCGCGT CTATACTGAG ACAACCGGAA CACGAGGTAC TTTCCAAACG CGCATTATTG
TATACGCCTA CGCTCACCAT GAATGACTAT GTCACCGAGC AGTATGCGAA TATTCAGGAG
TGCGACTCTA TTACGATCGA TCCGCATAAA GCGGGATATA TTCCTTATCC TGCCGGTGGG
CTGTGTTATA AAAACGGCGC TATGCGTAAC CTGGTAGCCT TTACGGCGCC GGTGGTATAT
CATGGGGGCA TTGATCCTAC AGTGGGCATC TACGGATTGG AAGGCTCCAA ACCTGGCGCC
GCTGCAGCTG CTGCTTATCT GAGTCACCAG GTGATTCCGC TGGACCAGAG TGGTTACGGA
CAGATACTTG GTAAATGCTT ATTCAACAGT AAACGCCTGT ACAGTGCCTT TATTACGATG
GCAGAACCGG ATGATCCGTT TATCATTGTA CCATTCCAGC GTCTGCCGGC TGAAAAGCAC
GGGGAAGATC CGCAGAAAAT AAAGGAACAA TATGATTTCA TCAAAAACGA GATCGTTCCA
AAAACCAATG AGGAGATCAT GTCCAATGCA GAAGCTGTAG AATTATTGCC GGAACTGGGC
AGTGATCAGA TCATCATTAC CTACACCTTC AACTTCAAGG AAAATGGTGT ATTAAACAAA
GATGTCGACA AACTGAATGA GCTGAACCTG AACATCTTCC AGGCACTGAG TCTTTCTCCG
GGAGAACATG ACCATCCGTC TAAAACACCG ATGTATGTCA CACAGTCACA GTTTGACAAT
GACTCTTATG GTAAATCATT TGTGAACAGC TATAAGGAAA GACTGGGCAT ATCTACAGAT
AATGATGAAC CGGTGAATAT ACTGATCTCC ACCACCATGA ATCCATGGTT GACAGATACC
GCAGATGGTA ACTTCATTCC TGAACTGGTG AAAGCATTAC GTCAGACGGT GCTGGAACAG
GTTGAAAAAG TAGTAGGAGC AATGGAACTC GCATAG
 
Protein sequence
MKQPSNSKKL FARQLQQQQN EILSKLRVKG TGSDDLAGWF LGPKAENTEL LHHLIQRAMD 
NHCNDRKNLY PNDPVYVTEE MKQTPEYQET VRVLQHKLDV LLEELKGSVP FWSYRWQSHM
NWDTTLPSMV GYFGTMLYNP NNVAAEASPV TTVLEMIVGD ELCKMLGYNI TDNNPAIPKA
WGHITCDGSI ANNEAMWAAR NLKYYSISLA AAIKDTPELS QAGALQLTLA NGTITTIGAA
SSWDLLNLSV DEVLSIPDRL QSEFNINLDL LTQILNNYSI QNIGFDGINK FLDSGIQSPS
MMAASTCHYS WPKSAAVLGL GANNLIKVYV DENARLHIGR LREELQKSLD RKSPVLMVVA
VIGSTEESAV DPLKDIVAVR EEFRQKGLNF VIHGDAAWGG YFASILRQPE HEVLSKRALL
YTPTLTMNDY VTEQYANIQE CDSITIDPHK AGYIPYPAGG LCYKNGAMRN LVAFTAPVVY
HGGIDPTVGI YGLEGSKPGA AAAAAYLSHQ VIPLDQSGYG QILGKCLFNS KRLYSAFITM
AEPDDPFIIV PFQRLPAEKH GEDPQKIKEQ YDFIKNEIVP KTNEEIMSNA EAVELLPELG
SDQIIITYTF NFKENGVLNK DVDKLNELNL NIFQALSLSP GEHDHPSKTP MYVTQSQFDN
DSYGKSFVNS YKERLGISTD NDEPVNILIS TTMNPWLTDT ADGNFIPELV KALRQTVLEQ
VEKVVGAMEL A