| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0083 |
|---|
| Symbol | |
|---|
| ID | 8356180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 98680 |
|---|
| End bp | 99663 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644962228 |
|---|
| Product | Hedgehog/intein hint domain protein |
|---|
| Protein accession | YP_003119790 |
|---|
| Protein GI | 256419137 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01445] intein N-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ATCTGCTGAC ATTACTCTGT TCTTTCCTCG TACTGCAATT GCTGGCGCAA
TCCCGCCCCA TGACAATGGC GGAATATGTA AAGGCAAAAT CATTTACCGT AAAAGATCTC
GATAACGATA CCTATGTTAA GTTCAATAAT GAATACGTAC TGGACCGCTA TGAGATGCGT
AAACCCTATC TCATTACAGG CGATGACGGT CAGAAGAAAA GAATTGACCT CTATCGGCTT
GTCGCCAAAG ACAGTATGCT GGACATTGCC ACCGTCATCT TCTACACCAA CGAAGCCGGG
AAGTTATACA CAGCTGTCAT GCCTTTATTC AACAGCAACC CTGATATCTG GAATCAATAC
TTTGAAGACA TTCATGCCAC CGACAAAGTG GAGAAGAACT ATGTATTGAA ACTCTCTTAT
GTGTTGTCCA AAGAATTCAG TTACCAGCTG TACAAGTCCA TGAATGCCGG TAAAGATGTG
AAAGAAGAAG CGGGCACTTA TGGCACAGAC ATCTGCTTCC CTGGCGATCA AATGGTCAAT
CTGGCCAATG GCGCACAGAA AGCCTTACGT GATATCCGTC CGGGAGACGA GATTATCAGT
CCGGATGCCA ATACACACCG GACCAGCACC ATCCGGGTAA AAGAGCTGGT ACAACATACC
GCAGAAAACT ATGCCATCAC CCGTTTGCTG GTCATGCACA CAATTGAAAA CAATACTGCC
GGTATGCATG AAGTACTGTT ATCAAACAAA GTATTACAGG CTACGCCGAA TCATCCGGTA
CTGACGGTAG CCGGGAAAAA ACAAATGGGA GCGGTTACGA CCGGCGACCA GCTGCTTTGT
ATGGATGAAC ACACCAATAC ACTCGTCACA TATACTGTTG TTAATAAAAC GGAGTCTGCC
GGTGGAAAAC AACCGGTATA CAACATCATC GCAGAAGGTG GAGACGCCTT CATGATGAAT
AATATCATGG TTTTGCAGAA ATAA
|
|---|
| Protein sequence | MKKYLLTLLC SFLVLQLLAQ SRPMTMAEYV KAKSFTVKDL DNDTYVKFNN EYVLDRYEMR
KPYLITGDDG QKKRIDLYRL VAKDSMLDIA TVIFYTNEAG KLYTAVMPLF NSNPDIWNQY
FEDIHATDKV EKNYVLKLSY VLSKEFSYQL YKSMNAGKDV KEEAGTYGTD ICFPGDQMVN
LANGAQKALR DIRPGDEIIS PDANTHRTST IRVKELVQHT AENYAITRLL VMHTIENNTA
GMHEVLLSNK VLQATPNHPV LTVAGKKQMG AVTTGDQLLC MDEHTNTLVT YTVVNKTESA
GGKQPVYNII AEGGDAFMMN NIMVLQK
|
|---|
| |