Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0061 |
Symbol | |
ID | 8356158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 74590 |
End bp | 77295 |
Gene Length | 2706 bp |
Protein Length | 901 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644962206 |
Product | glycoside hydrolase family 2 sugar binding |
Protein accession | YP_003119768 |
Protein GI | 256419115 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTAA ATTATTGTTA TGCATATCCC CTAAGATGGG TATGTGAACC TCAATATCAG TTCCCGATGA AGAGAATGTA TGCTGCAGTG GTCGCCATTG CATTTTGCTG CGCGGCAAAT GATAATAGTT ATGCGCAGGC AAACCCCGAT AATGCTACCT GGAAAATGCA ACCAGTAAGC ATCCAAACCA GGTGGGCGAA GAATGTCACC CCCCAGAATG TATTGCCAGA GTACCCACGT CCCCAGATGG TGAGAAGTGA GTGGCAGAAC CTGAATGGAC TGTGGGAGTA TGCCATTACA GGCAAAGATG CTGCAAAGCC TGCTCAATTC GACGGACAGA TATTAGTGCC ATTCCCTATT GAATCAGCCT TATCTGGTGT ACAGAAGCCT TTATTACCAA CGCAAAGACT TTGGTATAAA CGTAGTATCA GTAAACCTGA TGTAACAGTT GGCAAACGTG TGCTGCTTCA TTTTGGTGCT GTGGATTGGG ATGCAAAAGT CTACTTGAAT GGTAAAGAAG TCGGTGGACA TACTGGCGGC TATCAGAACT TCTCTTTTGA TATTACGGAT GCTTTGAAGG ACGGTACAAA CCAGCTGGAA GTCGCTGTAT TCGACCCTAC AGATCAGGGT ATTAACCCTC ATGGAAAGCA GGTGTTAAAC CCACAGAATA TAATGTATAC AGCCAGTAGC GGTATCTGGC AGACGGTTTG GATGGAGACT GTCCCTTCCG CTTATATTAA TAACATTCGC CTTACACCGG ATATTGATAA AGGTAGCCTG AAGTTGGAAG TACTGACTGC TGGAAAGACG GGCGATTATA CTGTTGAGGC TATTGCTTCG AATGGTAAAA GGGTGAAAGG CAAACCAAAT GCAGAGCTGT TATTACCAGT CCCAGACGCA AAGCTGTGGA GTCCAGATCA ACCCAATTTA TACAATCTGA ATGTAAAACT GTTGTATAAA GGAAAGGTTG TAGATACAAT AGGCAGCTAC TTTGGAATGC GCAAGATTGA AGTAAAGAAG GACGAGAAAG GTGTTGATCG CCTGTTCCTG AATAACAAGT ACACTTATCA CTTAGGAGTT TTAGATCAGG GTTTCTGGCC AGAAGGTTTA TATACGGCTC CAACTGATGA TGCCTTACAA TTTGATATTA TGGCTATCAG GAACATGGGG TATAATACCA TTCGTAAGCA TATTAAACTG GAGCCTGCAC GTTGGTATTA TCATGCGGAT AAAGCTGGTA TGCTGGTATG GCAGGATATG GTGACTTGTG CGAATGATAA GCCTGAGGCG AAAGCTGCAT TCGAAAAAGA AAACAAAGAG AATATTGCGC AGTTATATAA CTATCCAAGT ATTGTTATTT GGGTGCTGTT TAATGAAGGG TGGGCGCGTT ATGACCAGAA GCGCTTGACA GAGTGGATGA AGAAAGAAGA TCCATCTCGC ATTGTAAATG GACATACTGG TGAGAACTAT GACCGAGATG CACCACAGGA CGTATCTCAG AAATGGGCGA GTAGTGACTT GACTGATATT CATGATTATC CGGGACCTGG TATTCCGCCA GCCTTACCTG GTAAGGCGCG AGTACTTGGA GAATGGGGAG GTGTAAGAGT ACCTACGTTG AAACATCAAT GGAACGATAT GGAAGGATGG GGCTACATTC AGGTACCTGC ATCGGCATTT AAAATGAAAT ATGATTCCCT GATCAAAAAC TTAAAAAAGT TTGAAGAACA GGGGCTTTCT GGATCAATTT ATACAGAACC ATTTGATGTA GAAACCGAAG AGAATGGCAT GATGACATAT GACCGAGAAG TGATCAAAGT CGCACCTGAG GAGCTAAGAA ATATACACGG TCAAATATTG GCCCAGGCGA AAAACTATGC AGCTACTATT GGGGTGTTTC AGGCAAAAAT TGCAGATACC GCAAATCCTG ATTTACAATA TGCGACACTT CTCGAACAAT TTAAAAATGG CAAAAAAGAT TCTGCATTCT TAAGAGACCT AACATTAATG GCAGTTCGTT TAAAAGACGA CATAAACATG TATAAACTTT GCAATACTTA TCTATCTCAA CTTTCAGAGC CAATGACATT AAACACACTC ACATTTATTG ACCGGTTTAC ATTTTCAATA AATGATGTAG GATTTAATAT TATACAAAAA AATAAAGAGA AAGCCATAGA AATTCTCGGA TACAAAAAGG TAAACGACAT ATTAAAATCA TGCATTTTTG AAGACGAAAT AAAGCCTTAT GTGTCAGACA TCAAAATAAA TCCAGATTGG AATGTCTTAG AAAAAAAACT AGTCAATAAA TATAATGCTC CTGGGGAGGA AATACTACTA ACAGCGAAAT CTACACATAT GTTAAATCGA AAGGACTGGC CGAATTTTGT AGCTTCCACA TCTGCTCTGG TAAATAAATA TGGACAAAAC ATGTCTACCA CTACTTTAAA CAACTATGCC TGGACAATTT TTGAGAATGT TTCTGACACA AGTCTGCTGA AAGAAGCACT AGTATGGAGT AGAGCTAGTC TTCAAGATGA GATCAGCCCT GATAAATATG ACACTTATGC TAACTTGTTA CATAAGATAG GGCGCCAAAA GGAAGCGGTT GAATGGGAAC AAAAAGCAGT TGACATGCAA CCTGGCCCCA ACGTGTTCAC TCAAACCCTC GAAAAAATGA AACGCGGTGA AAAAACCTGG AACTAG
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Protein sequence | MALNYCYAYP LRWVCEPQYQ FPMKRMYAAV VAIAFCCAAN DNSYAQANPD NATWKMQPVS IQTRWAKNVT PQNVLPEYPR PQMVRSEWQN LNGLWEYAIT GKDAAKPAQF DGQILVPFPI ESALSGVQKP LLPTQRLWYK RSISKPDVTV GKRVLLHFGA VDWDAKVYLN GKEVGGHTGG YQNFSFDITD ALKDGTNQLE VAVFDPTDQG INPHGKQVLN PQNIMYTASS GIWQTVWMET VPSAYINNIR LTPDIDKGSL KLEVLTAGKT GDYTVEAIAS NGKRVKGKPN AELLLPVPDA KLWSPDQPNL YNLNVKLLYK GKVVDTIGSY FGMRKIEVKK DEKGVDRLFL NNKYTYHLGV LDQGFWPEGL YTAPTDDALQ FDIMAIRNMG YNTIRKHIKL EPARWYYHAD KAGMLVWQDM VTCANDKPEA KAAFEKENKE NIAQLYNYPS IVIWVLFNEG WARYDQKRLT EWMKKEDPSR IVNGHTGENY DRDAPQDVSQ KWASSDLTDI HDYPGPGIPP ALPGKARVLG EWGGVRVPTL KHQWNDMEGW GYIQVPASAF KMKYDSLIKN LKKFEEQGLS GSIYTEPFDV ETEENGMMTY DREVIKVAPE ELRNIHGQIL AQAKNYAATI GVFQAKIADT ANPDLQYATL LEQFKNGKKD SAFLRDLTLM AVRLKDDINM YKLCNTYLSQ LSEPMTLNTL TFIDRFTFSI NDVGFNIIQK NKEKAIEILG YKKVNDILKS CIFEDEIKPY VSDIKINPDW NVLEKKLVNK YNAPGEEILL TAKSTHMLNR KDWPNFVAST SALVNKYGQN MSTTTLNNYA WTIFENVSDT SLLKEALVWS RASLQDEISP DKYDTYANLL HKIGRQKEAV EWEQKAVDMQ PGPNVFTQTL EKMKRGEKTW N
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