| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0058 |
|---|
| Symbol | |
|---|
| ID | 8356155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 71777 |
|---|
| End bp | 72325 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644962203 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003119765 |
|---|
| Protein GI | 256419112 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCCT TGAATATCAA CCATTCAGAA GACGAACTAT TTTTACTGTT TCAACAGGGA
AATGAAGCTG CTTTTGGCGT TCTCTATGCC CGTTATGTTG ACCTGCTGTA CCTCCATGCA
TATTATCAGC TACAGGATGA TGCCTTCGCT AAAGATGCGG TACAGGATGT ACTTGTTTAC
TTCTGGAATA ACCACGCAAC GCTGGAAATC AGAACCAGCA TTAAAACATA CCTGACCGGG
GCCATACGGC AGCGTTGTGC GGACCTGATA CGGAAAGAAG TCAGTCTCAG GTACCGGCAG
CAGACCTATG CTTCCATGAC GACGTCTGTG ACAGGTACAT CTCCACTGGA AACGAAGGAG
CTGAATAAGC AGATACAGAG CGCCATGTCT TTTATGAGTC CAACCAGCAG AAAAGCGTTT
GAGATGTCAT ATCTCGAAAA AAAGACCAGC AAGGAGATTG CAAACATTCT GAATATTAAA
GTACAGACAG TTAAAAACCA CATTCAGCAG GCTTTGAAGA TCTTACGCAA GCGCCTGAAA
AAAAATTAA
|
|---|
| Protein sequence | MNSLNINHSE DELFLLFQQG NEAAFGVLYA RYVDLLYLHA YYQLQDDAFA KDAVQDVLVY
FWNNHATLEI RTSIKTYLTG AIRQRCADLI RKEVSLRYRQ QTYASMTTSV TGTSPLETKE
LNKQIQSAMS FMSPTSRKAF EMSYLEKKTS KEIANILNIK VQTVKNHIQQ ALKILRKRLK
KN
|
|---|
| |