Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_8726 |
Symbol | |
ID | 8340118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 10116708 |
End bp | 10117631 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644961817 |
Product | polysaccharide deacetylase |
Protein accession | YP_003119382 |
Protein GI | 256397818 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.185001 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCGCC CGCTCTTGTC CCGGTTCCCC GCCCGCAAGC ACCGCACGCA GACGATCGCC GCCGTCGCCG TCCTCGGCGC GGTCGGGGTG GCCGCGACGG CGTGCGGGGG CGGGGGTGCT GGCGGCGCGG GTGGCGGCGC TGGCGGGCGG GCAGCGAGTG CGACGGGTGG GTCGAGTGCT CCGAGTACGT CCGAGGCGAG ACCGTCTTCG CCCTCCTCGC TCTCGTCGCC CTCCTCACCC GCCTCACCTT CTTCGCCCTC CTCGCCCACG CCATCCCCGC GCACCAACGC GGACGTCGAC TGCTCGGTCG CCAAGTGCAT CGCCCTCACC TTCGACGACG GCCCGGGTCC GGACACCGGC CGCCTGCTGG ACGTGCTGAA GGCGCAGAAC GTCCCGGCGA CCTTCTTCGT CCTCGGCGAC CAGGCGGTCA AGTACCCCTC CCTGGTCCAC CGCGAATACG CCGAGGGCAA CGAGGTCGGC AACCACACCT GGGACCACAA GGACCTCTCC CGCCTGCCCG CCGCCGCGGT CCAGGACGAG ATCACCCGCA GCGCCGACGC GATAGCGGCC ACCGGCATCC CCCGCCCGAC CCTGGTCCGC CCGCCCTACG GCGCGGTCGA CGACACCGTC CGCACCGTCG CCGGCGCCCC CTTCATCATG TGGCGCGTCG ACCCCGAGGA CTGGAAGTAC CCAGACCCGG CCCGCGTCGC CGACCAGATC GTCGGCCACG CCAAACCCGG CCGCATCGTC CTCTCCCACG ACACCCACAA GACCACCGTC GACGCGACCC CCGCAGTGAT CCAGCGCCTC AAACACCAGG GCTACACCTT CGTCACGGTC AGCACCCTGA TGAAGGGCGT CGGACTGCGG AACGGCACGT CGTACTTCAA CCGGCCGCCG GCCATCACCG GAGGCGGCAG CTAG
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Protein sequence | MIRPLLSRFP ARKHRTQTIA AVAVLGAVGV AATACGGGGA GGAGGGAGGR AASATGGSSA PSTSEARPSS PSSLSSPSSP ASPSSPSSPT PSPRTNADVD CSVAKCIALT FDDGPGPDTG RLLDVLKAQN VPATFFVLGD QAVKYPSLVH REYAEGNEVG NHTWDHKDLS RLPAAAVQDE ITRSADAIAA TGIPRPTLVR PPYGAVDDTV RTVAGAPFIM WRVDPEDWKY PDPARVADQI VGHAKPGRIV LSHDTHKTTV DATPAVIQRL KHQGYTFVTV STLMKGVGLR NGTSYFNRPP AITGGGS
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