Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_8679 |
Symbol | |
ID | 8340061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 10064665 |
End bp | 10066266 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644961760 |
Product | sugar transporter |
Protein accession | YP_003119335 |
Protein GI | 256397771 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.546222 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCCGC CGCCGGTCGC GACCACGATG GCAGAGGCGA ACGCCGCCCC GCCCTGGGCA GGCGAGAATG CGAGCGATGC GATGCAAGGC TTCTCCCGGG AACCCGGTAC GACCGGGCCG ATCACCATCA CGCTGCCCAA GGCCGGTGAG CGGAAAGTCT GGGGCTGGGC CGTCATCATC GCCGTCGGCG GCTTCCTGTT CGGCTTCGAC ACCGGCGTGG TCTCCGGCGC GCTGCTGTAC ATCGCCAAGG ACTTCGACCT CTCGAACTCC GAGAAGAGCA GCGTGGTCAG CGTCCTGCTG ATCGGCGCGA TGATCGGCGC GCTGGCCGCC GGACGGATCT CCGACGGGCT CGGGCGCAAG AAGGCGGTGA CCCTCTTCGG TCTGGTGTTC GCCGTGGGCA CGCTGGTCGC GGTCGTCGCG CAGGACTACT GGACGCTGCT GGCGGCGCGC TTCATCCTGG GCCTGGCGGT CGGCGGCGCC TCGGCGCAGG TCCCGGTCTA CCTCGGCGAG ATCTCGCCGG CGAACATCCG CGGCCGCATC CTGTCGCTGA ACCAGCTGCT GATCACCGTC GGCATCCTGT GCTCGTACCT GATCGACCTG GCGTTCTCAC ACAGCGGGAA CTGGCGCGCG ATGTTCGCCT TCGGCGCCAT CCCGGCGCTG ATCCTGAGCC TGGGCGTGTG GTTCGTGGTG CCGGAGTCGC CGACCTGGCT GTACACGCAG GGGCGCACCG AACAGCTGCG CAAAGGGCTG CTGAAGGTCA CCGACGCCGC GCAGGCCGAC GAGATCATCG AGGTCTACGG CCGGCGCACC GCTCTGGCGG CGGAGCAGGA AGCGGCGCGC GGCGAGCACG AGAAGGGCTG GCGGATCCTG CTCACGCCGG GAGTGCGCCC GGCGATGATC GTCGGGCTGA CGATGGCCGC GCTGCAGCAG TTCGGCGGCA TCAACACGAT CATCTACTAC GCCCCGACCA TCATCGAGCA GACCGGCCGA AGCGCCAGCA ACTCGATCAT CTACTCGGTC TACATCGGCA TCATCAACTT CGTGATGACG GTCGTCGCCA TCAACACCAT CGACCGCCTC GGCCGGCGCC AGCTGCTGCT GACCTCGCTG GCCGGGATGG CCGGCTTCGT GGCGCTGCTG GGCTTCAGCT TCATCTGGAG CTGGAACTCC AACCTGACGC TGCTGTTCAT GGTCGCCTAC ATCGCGGCCT TCGCCGGCGG CCTCGGCCCG GTGTTCTGGG TGCTGGTCGG CGAGATCTTC CCGACCCGGG CCAAGGCCGA CGGCTCGAGC GCGGCGACGA CCGTCAACTG GCTGTCGAAC TTCATCGTCA GCGAGTCCTT CCTGACCGTC GCCAACGGCA TCGGGCAGGG GCAGACGTTC CTGATCTTCG CCGGGGTCTG CGTCGTCGGC CTGCTGTTCG TCGGCCGCTA CGTGCCGGAG ACGAAGAACC GCGACACGAA CGAGGTGCAG GCGGCGCTGT TCAAGCGGTT CGGGAAGCAG CCGGTGCCGG CGTCGCGGAC GTCCGCTGCG TCGTATGACG CGGGGCGCGC GGACGCGGGC TCGGCGGTCG ACCCTGCCGA GCGTCGACAG GATCGCCGGT GA
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Protein sequence | MPPPPVATTM AEANAAPPWA GENASDAMQG FSREPGTTGP ITITLPKAGE RKVWGWAVII AVGGFLFGFD TGVVSGALLY IAKDFDLSNS EKSSVVSVLL IGAMIGALAA GRISDGLGRK KAVTLFGLVF AVGTLVAVVA QDYWTLLAAR FILGLAVGGA SAQVPVYLGE ISPANIRGRI LSLNQLLITV GILCSYLIDL AFSHSGNWRA MFAFGAIPAL ILSLGVWFVV PESPTWLYTQ GRTEQLRKGL LKVTDAAQAD EIIEVYGRRT ALAAEQEAAR GEHEKGWRIL LTPGVRPAMI VGLTMAALQQ FGGINTIIYY APTIIEQTGR SASNSIIYSV YIGIINFVMT VVAINTIDRL GRRQLLLTSL AGMAGFVALL GFSFIWSWNS NLTLLFMVAY IAAFAGGLGP VFWVLVGEIF PTRAKADGSS AATTVNWLSN FIVSESFLTV ANGIGQGQTF LIFAGVCVVG LLFVGRYVPE TKNRDTNEVQ AALFKRFGKQ PVPASRTSAA SYDAGRADAG SAVDPAERRQ DRR
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