Gene Caci_8679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8679 
Symbol 
ID8340061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp10064665 
End bp10066266 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content69% 
IMG OID644961760 
Productsugar transporter 
Protein accessionYP_003119335 
Protein GI256397771 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00879] MFS transporter, sugar porter (SP) family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.546222 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCCGC CGCCGGTCGC GACCACGATG GCAGAGGCGA ACGCCGCCCC GCCCTGGGCA 
GGCGAGAATG CGAGCGATGC GATGCAAGGC TTCTCCCGGG AACCCGGTAC GACCGGGCCG
ATCACCATCA CGCTGCCCAA GGCCGGTGAG CGGAAAGTCT GGGGCTGGGC CGTCATCATC
GCCGTCGGCG GCTTCCTGTT CGGCTTCGAC ACCGGCGTGG TCTCCGGCGC GCTGCTGTAC
ATCGCCAAGG ACTTCGACCT CTCGAACTCC GAGAAGAGCA GCGTGGTCAG CGTCCTGCTG
ATCGGCGCGA TGATCGGCGC GCTGGCCGCC GGACGGATCT CCGACGGGCT CGGGCGCAAG
AAGGCGGTGA CCCTCTTCGG TCTGGTGTTC GCCGTGGGCA CGCTGGTCGC GGTCGTCGCG
CAGGACTACT GGACGCTGCT GGCGGCGCGC TTCATCCTGG GCCTGGCGGT CGGCGGCGCC
TCGGCGCAGG TCCCGGTCTA CCTCGGCGAG ATCTCGCCGG CGAACATCCG CGGCCGCATC
CTGTCGCTGA ACCAGCTGCT GATCACCGTC GGCATCCTGT GCTCGTACCT GATCGACCTG
GCGTTCTCAC ACAGCGGGAA CTGGCGCGCG ATGTTCGCCT TCGGCGCCAT CCCGGCGCTG
ATCCTGAGCC TGGGCGTGTG GTTCGTGGTG CCGGAGTCGC CGACCTGGCT GTACACGCAG
GGGCGCACCG AACAGCTGCG CAAAGGGCTG CTGAAGGTCA CCGACGCCGC GCAGGCCGAC
GAGATCATCG AGGTCTACGG CCGGCGCACC GCTCTGGCGG CGGAGCAGGA AGCGGCGCGC
GGCGAGCACG AGAAGGGCTG GCGGATCCTG CTCACGCCGG GAGTGCGCCC GGCGATGATC
GTCGGGCTGA CGATGGCCGC GCTGCAGCAG TTCGGCGGCA TCAACACGAT CATCTACTAC
GCCCCGACCA TCATCGAGCA GACCGGCCGA AGCGCCAGCA ACTCGATCAT CTACTCGGTC
TACATCGGCA TCATCAACTT CGTGATGACG GTCGTCGCCA TCAACACCAT CGACCGCCTC
GGCCGGCGCC AGCTGCTGCT GACCTCGCTG GCCGGGATGG CCGGCTTCGT GGCGCTGCTG
GGCTTCAGCT TCATCTGGAG CTGGAACTCC AACCTGACGC TGCTGTTCAT GGTCGCCTAC
ATCGCGGCCT TCGCCGGCGG CCTCGGCCCG GTGTTCTGGG TGCTGGTCGG CGAGATCTTC
CCGACCCGGG CCAAGGCCGA CGGCTCGAGC GCGGCGACGA CCGTCAACTG GCTGTCGAAC
TTCATCGTCA GCGAGTCCTT CCTGACCGTC GCCAACGGCA TCGGGCAGGG GCAGACGTTC
CTGATCTTCG CCGGGGTCTG CGTCGTCGGC CTGCTGTTCG TCGGCCGCTA CGTGCCGGAG
ACGAAGAACC GCGACACGAA CGAGGTGCAG GCGGCGCTGT TCAAGCGGTT CGGGAAGCAG
CCGGTGCCGG CGTCGCGGAC GTCCGCTGCG TCGTATGACG CGGGGCGCGC GGACGCGGGC
TCGGCGGTCG ACCCTGCCGA GCGTCGACAG GATCGCCGGT GA
 
Protein sequence
MPPPPVATTM AEANAAPPWA GENASDAMQG FSREPGTTGP ITITLPKAGE RKVWGWAVII 
AVGGFLFGFD TGVVSGALLY IAKDFDLSNS EKSSVVSVLL IGAMIGALAA GRISDGLGRK
KAVTLFGLVF AVGTLVAVVA QDYWTLLAAR FILGLAVGGA SAQVPVYLGE ISPANIRGRI
LSLNQLLITV GILCSYLIDL AFSHSGNWRA MFAFGAIPAL ILSLGVWFVV PESPTWLYTQ
GRTEQLRKGL LKVTDAAQAD EIIEVYGRRT ALAAEQEAAR GEHEKGWRIL LTPGVRPAMI
VGLTMAALQQ FGGINTIIYY APTIIEQTGR SASNSIIYSV YIGIINFVMT VVAINTIDRL
GRRQLLLTSL AGMAGFVALL GFSFIWSWNS NLTLLFMVAY IAAFAGGLGP VFWVLVGEIF
PTRAKADGSS AATTVNWLSN FIVSESFLTV ANGIGQGQTF LIFAGVCVVG LLFVGRYVPE
TKNRDTNEVQ AALFKRFGKQ PVPASRTSAA SYDAGRADAG SAVDPAERRQ DRR