| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8635 |
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| Symbol | |
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| ID | 8340017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 10011916 |
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| End bp | 10016385 |
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| Gene Length | 4470 bp |
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| Protein Length | 1489 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644961717 |
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| Product | YD repeat protein |
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| Protein accession | YP_003119292 |
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| Protein GI | 256397728 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.128218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGTC CGACGGGGTG GGATGTTCTG GGGTTGGATG GGGATCCGAC TCCCGGCGTG
GTGGAATCGG TGCAGGCGCT GGCGAAAGCC TTCGGGGACT TTGCCCACGA TGCGGAAGCG
GCGTATCACA GCCTGAACTC GTTCGGGTCG GATGCTACGG CGTTGCAGTG GGTGGGTCAG
ACTGCTGATG CGTTCAAGGG CCAGTTCGGT CCGTTGCCGG GGCGGCTGCA GAAGCTGTAC
ACGTCCTACA GCGAAGCCTC CGATGCGCTG TCGGCGTATG CGCCGCAGCT TCAGGCGGCG
CAAACCAAAG CCGACACCGC GCTGCGTCAG GCACAAGACG CCAACTCGAA TCTGCAACGC
GCCACCAGCA ACGCCAACAA CGCTGCCACT GATTTGAAGA CGGCACAGCA GAGCCATGCC
ACAACGCCGA ACCCGCAGGC TGTTACGGAT GCCCAGACCG CGCACGACAC CGCGCAGACC
AACCTGAACA ACGCCAAAGC CCACATGGCC GCGTTGGCCA AGCAAGCCAA CGACGCCTAC
AACGACCGCA TCAACGCGGC GAAGACCTGT GGCAGTGCCC TGCATCACGC CCAATCCGAC
GGCATCCACA ACAAACACTG GTGGGAACAC GTCGGCGAGG TCCTGTCCGA AGTCGGCGGC
GAAATCGCCG ACATCGCCAA CGAACTCGCC CCCTTCCTCG ACATCCTGGC GCTGGCCACC
TCCTGGATCC CCGGCGTCGA CGTCGTCACC GCCGCCCTCG CCGAAGCCGA CAACATCATC
GCCATCGCCG GCACTGCCAT GAAGATCACC GGCGACGCGA TGCAGGGCCA CTGGGGCGAC
GCGCTCATGG GCGCCGGGAT GCTCGGCCTA CAGTTCGTCG GCGGACGCAT GCTGGGCAAG
CTCGGGGGCG AGGCCGAAGG CGAGGGGCGC AACCTCCTGG GCAGCGCGGA GAAGGACGCT
GAAGGCGATG CGGCTTCAAC CGCCGAGAGG GGTGGCCAGG AGGTCGACGG CAATGCCGGC
GCCACCACGG ACGGCGACCC CGTCGACGTG GTCTCGGGCC AGATGCTGAC CTGGGACGAC
GACGTCGTGC TGCCGGGCGT CCTGCCGCTG ATCCTGCGCC GCGCCTACGC CTCGAAGTAC
GACACCGGGC GCCTGTTCGG ACCCGGCTGG GCCTCGACGC TCGACCAACG GCTGTCGGTG
AACGCCGCCG GGATCCACTT CGTCGGCGAC GACGCGCAGA CCCTGCACTA CGCGCTGCCA
AGCGAGCCCG GCGACACGGT CTACCCGCGC GAAGGCGCCC CTTGGCCGCT GGTCTGGGAC
ACCGCGGCCG ACGAGATACG TATCAGTGAT CCGATACGCG GCTACACATG GCACTTCCCG
ACAGTGCATT ACAGCGAGGA CACCGGGCAG ATCCGCGACC TCATAGCCAT GAGCGACCGG
AGCGGCAACC GTGTCGAGTA CATCCGTGAC GCCCTCGGGA CGCCGGTCGA GGTGCGGCAC
TCGGGCGGCT ACCGAGTCGC TGTGGACCTC CGCGAGACGG CATCCGGGCA GCGCATCAGT
GCCCTGAGGT TGGTTGGCGA TGACGCGGAA TCCGCTCTGC TCATCGGATT CGGCTACGAC
GAACGCGGCC GCCTGAGCCG CGTCATGGAC CCCGAGGGCA ACTCCCTCCA GTACTCCTGG
GACGAGCAGA ACCGGATCAC CGGCTGGCAG GACCGGCTCG GGATGGACTA CCACTACACC
TACGACGAGC GCGGCCGCGT CGTCCACGGC CAGGGTAACC ACGGGTTCCT GACCGCGTCG
TTCGACTACC ACGACGAAGA GCGCTTCACC CTCGTCACCG ACTCCGACGG GAACGTCACG
CGCTACGGCT ACGACGAGCG CGGCCGGATC GTGGCGGTCA CCGACCCGGC CGGCAACGTC
GAACTGCGCG AGCTGGACCG GTATGGGAAC CAGCTGTCGG TGGTCGACGA AATGGGACGC
GCGACCACCT TCGAACGCGA CGGACTCGGG CAGGTTCTCC GCTCGGTCAT GGCCGACGGC
GCGGAGACCA CGACGACGTG GGCCGCACCG GGACTGCCCG AGCAGATCAC GGACGCCATC
GGAGCGGTAT GGCAGTACTC GTATGACGCG ATGGGCCGCC TGGCGACGGA GACCGACCCG
TTGGGCGCCG TCACGTCCTA CGAGTACACC GCGAACGGAT ATCTGAGCCG GATGACCGAT
CCGGCTGGGC ATGCGATCAC CGTCGAGTGC GACGCGGTCG GGTTGCCGGT GCGGGTAATG
GACCCCGACG GTTCGGTCAC GACCACCACG CGCGACGCGG CAGGACGTAT CAGTACTTTG
ACTGACGGCT CCGGTCGCGT CACGGAACAG CACTACGACT CGCGCGGCAA CCTGCTGACG
CGCATCATGC CGGACGGCGC GACGTGGACC TTCAGCTACG ACCTCGAGAG CAACCTGAGC
GGCGAGCAAG CGCCGGACGG CTCGGTGCGT ACGTGGCAGT ACACGTTCTT GAACACCTTG
GTCGGACGCA CTGAGGCGGA CGGCGCGGCC TATCGCTTCG CGTACGACGG CCAGATGCGG
CTGACGACGG TCACCGGACC GACCGGAGCC GCCTGGCGCT ACGAGTACAA CCCCGTCGGG
CATCTCGTGG CTGAGACCGA CTTCAACGGC CGGCGCATCG ACTACGAGCG GGATGCCGTC
GGTCAGATGA CCGTCCTGTC GCAGGCCGAG GGCCGGCGGC AGCAGTTCCT CCATGACCCC
GTCGGCAGGG TGCTGGCGAT GGACGCGGAC GGCGACGTCA CCCGCTACAG CTTCGACGCT
GCAGGGCGCA TGATCGCAGC CACGGCGCCG GGAACGGAAC TCAGCCGGAC GTACGACGCG
GTGGGGCGGC TCGTCACGGA GACCGTGGAC GGGCACGCCG TGTCGTATCG CTACGACGCG
GCGGGCCGTG CCGCCGGACT TCGGCTGTCG CAGGGGCACG AGGCATCGTG GGAGTTTTCG
CCGGGCGGCG CGCTTACACG GCTCAGCTCG TCCGGTCACG AGATCGCGTT CACGACGGAC
GCGGCCGGTC GTGCCACCGG CTGGGTGGCG GATCGCAAGC TGAGCATGAC GCGCGGATTC
GATGCCGCGG GGCGCTTGGC CGCACAGCGG GTCACGTTCG GAACGTCGGC TCTGGTCGCG
CGGGATTTCG CGTACTCGCC GACGGATCTG CTCTCTGAAA TCCGCGATGT GCGGACCGGC
ACGCGTCGCT TCGAACTGAC CAAGGCCGGG CGGGTGGCTG GCGTCCAGGC CGAGGGTTGG
CACGAGTCCT ACGCATATGA CGCCCTGGGC AATCTGGCGT CGACCAACAG CCAGAACAGC
GAATCGGTTG TCTATGTCCA CGACGGCACG CTCATCAGCT CTGCCGGACG GACCGTCTAC
CGGCACGATG CGATGGGCCG GGTGGTCTCG AAGACCCGCC GCCTGCTTTC CGGTGGCACG
AAGACCTGGG ACTACCGCTG GGATGCGCGC AATCGGCTCG TGGCCGCGCG GACGCCCGAG
AACGTCGTGT GGACGTATCA GTACGACCCG CTGGGTCGCC GCGTCGGCAA GGTCCGCCTG
AACGGGGACG GCAGCGTGGC CGAGCAGATC CGCTTCACGT GGGACAAGAC CCGGCTGGCT
GCCGTCACGG CGGCCGACGG CACGGTCACG ACCTGGGACT ATCTGCCCGA CACCTTCACG
CCGATCGCTC AGCATACGCA CACGCCGGCG GCCGGGTCTG TGGATCCCGA CGTGGCTGTG
ACGTACGACG TGGCTCCGGT GTCTGCGTCG GAGCCGGACT TCGCGCTTGT CGTGACCGAC
CCCGTCGGCA CACCTACGGA GCTCGTCAGC GCTGACGGCC ATGTGGTGTG GCAACAACGG
CGCGCGTCCA TCTGGGGATT GCCCGCGGAT ATCGTCCCGC CGGACGCGGA CGAATTCCCG
CTGCGTTTCC CGGGGCAGTA TCACGACTCT GAGACCGGAC TGCACTACAA CCTCAACCGC
TATTACGACC CGGAAGCGGC CGCGTACCTC ACGCCCGACC CACTGGGTCT GGAGCCGGCG
CCGAACCAGT ACGGCTACGT CGGCAACCCG CTCGCCGACA GCGACCCGCT CGGCCTCTAC
CCGGCCTCCG GCAACGCCCG GGGCGGCAAC GGCTCCAACG AGAACGTGAT GCCGAAGAGC
CAGGCTGACG ACGTCGCCAA ATATCTCGGC TACAAGAAGA CCAAGGAAAT GTCGGCGGGC
AAGCAGCCGA TCTGGGTGAA CAAGAAGGCC GGCGGCGGCC AGCCGAAGTA CATCACCTAC
GACCGGACCG GCCACAGCGG CGGTATCTTC AAGGGCGCCA GCTTCGAGAA ACCGTTCCAG
ACCACCAAGG ACACGGGTCG CGACGGCACC TACGATCTCG ACGTCGATGG GAGCGGGAAC
GTGTCCGGTC TGAAATGGGT CGCGAAGTGA
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| Protein sequence | MARPTGWDVL GLDGDPTPGV VESVQALAKA FGDFAHDAEA AYHSLNSFGS DATALQWVGQ
TADAFKGQFG PLPGRLQKLY TSYSEASDAL SAYAPQLQAA QTKADTALRQ AQDANSNLQR
ATSNANNAAT DLKTAQQSHA TTPNPQAVTD AQTAHDTAQT NLNNAKAHMA ALAKQANDAY
NDRINAAKTC GSALHHAQSD GIHNKHWWEH VGEVLSEVGG EIADIANELA PFLDILALAT
SWIPGVDVVT AALAEADNII AIAGTAMKIT GDAMQGHWGD ALMGAGMLGL QFVGGRMLGK
LGGEAEGEGR NLLGSAEKDA EGDAASTAER GGQEVDGNAG ATTDGDPVDV VSGQMLTWDD
DVVLPGVLPL ILRRAYASKY DTGRLFGPGW ASTLDQRLSV NAAGIHFVGD DAQTLHYALP
SEPGDTVYPR EGAPWPLVWD TAADEIRISD PIRGYTWHFP TVHYSEDTGQ IRDLIAMSDR
SGNRVEYIRD ALGTPVEVRH SGGYRVAVDL RETASGQRIS ALRLVGDDAE SALLIGFGYD
ERGRLSRVMD PEGNSLQYSW DEQNRITGWQ DRLGMDYHYT YDERGRVVHG QGNHGFLTAS
FDYHDEERFT LVTDSDGNVT RYGYDERGRI VAVTDPAGNV ELRELDRYGN QLSVVDEMGR
ATTFERDGLG QVLRSVMADG AETTTTWAAP GLPEQITDAI GAVWQYSYDA MGRLATETDP
LGAVTSYEYT ANGYLSRMTD PAGHAITVEC DAVGLPVRVM DPDGSVTTTT RDAAGRISTL
TDGSGRVTEQ HYDSRGNLLT RIMPDGATWT FSYDLESNLS GEQAPDGSVR TWQYTFLNTL
VGRTEADGAA YRFAYDGQMR LTTVTGPTGA AWRYEYNPVG HLVAETDFNG RRIDYERDAV
GQMTVLSQAE GRRQQFLHDP VGRVLAMDAD GDVTRYSFDA AGRMIAATAP GTELSRTYDA
VGRLVTETVD GHAVSYRYDA AGRAAGLRLS QGHEASWEFS PGGALTRLSS SGHEIAFTTD
AAGRATGWVA DRKLSMTRGF DAAGRLAAQR VTFGTSALVA RDFAYSPTDL LSEIRDVRTG
TRRFELTKAG RVAGVQAEGW HESYAYDALG NLASTNSQNS ESVVYVHDGT LISSAGRTVY
RHDAMGRVVS KTRRLLSGGT KTWDYRWDAR NRLVAARTPE NVVWTYQYDP LGRRVGKVRL
NGDGSVAEQI RFTWDKTRLA AVTAADGTVT TWDYLPDTFT PIAQHTHTPA AGSVDPDVAV
TYDVAPVSAS EPDFALVVTD PVGTPTELVS ADGHVVWQQR RASIWGLPAD IVPPDADEFP
LRFPGQYHDS ETGLHYNLNR YYDPEAAAYL TPDPLGLEPA PNQYGYVGNP LADSDPLGLY
PASGNARGGN GSNENVMPKS QADDVAKYLG YKKTKEMSAG KQPIWVNKKA GGGQPKYITY
DRTGHSGGIF KGASFEKPFQ TTKDTGRDGT YDLDVDGSGN VSGLKWVAK
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