| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8579 |
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| Symbol | |
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| ID | 8339961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 9948989 |
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| End bp | 9950776 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644961664 |
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| Product | type IV secretory pathway VirB4 protein-like protein |
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| Protein accession | YP_003119239 |
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| Protein GI | 256397675 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.161073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.268088 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCGC TCACCGCAGC CCTCAAGATG CTACCCATCT GGACTACCCG ACCGGCCCAT
CAAACCCGCA ACGTCCTGGG CCTGGGTCCG GCAAGTCTTG AAGTGGGCAC CCACACCCTC
AAAGTCGGCG ACACGATCGC CGCGACCTTC GCAGTCGCCG ACTACCCGGC CGAGGTCGCG
GCCGGTTGGC TCGAACCGCT GCTGAGCTTC CCTGCGCGGA TCGGCGTCGC CGTCCATATC
GAGCCGGTCC CGAGCCCTAT CGCTGCGGAC CGCCTACGCA AGCAGCGCGC CCGGCTGGAA
TCCGGCCGTC GGCACGCCGC CTCACGCGGG CACCTCGACG ACCCCGCCAC CGAGGCAGCT
GCCGCTGACG CGCGCGAACT CGCTTACCGC GTCGCCTGTG GCGAGGGGAA GTTGTTCGGG
GTCGGGATCT ATCTGACGAT CCACGCCGAC AGCGCCGATG AACTCGCCGA ACTCACAGCT
CAGGTCCGCT CGCTCGCGGA GGGGATGCTA CTGCGCCTCG TACCTGCCAC GTTCCGGACG
GTCCAGGGCT GGTGCTCGAC GCTGCCTCTT GGCCTGGACC TGCTGAAGAT CCGGCGGACG
TTCGACACCG AGGCTTTGGC AACGCTGTTC CCGTTCACGT CCGGCGACCT GCCGCTACCG
CAGAACTCGA CGTCAGCCGT CTTGCTCGGG GTCAACGCGA CCGACTCCGG ACTGGTGATG
TGGGACCGCT GGGCGGCGCC GAACCACAAC TCGGTGGTCC TGGCCCAATC CGGCGCCGGG
AAGTCCTATC TCGCCAAGCT CGACGTCCTC CGGAACCTCT ACCAGGGCGT TGAGGTCATG
GTCATCGACC CGGAGCAGGA GTACGCCCGG CTCGCGCACG CCGTAGGCGG AACGGTCGTC
AGCCTCGGTG CTCCAGGCGT CCGCATCAAC CCCTTCGATC TTCCGAACAC CGGCGACAGC
TCCGATGCGA TCCGCCGCCG GACCCTGTTC GGGCACACCG TGGTGTCCGT GCTCCTCGGC
CGGGACCTGA CCGCTGGCCA GCACGCGGCC CTGGACGGCG CGATCCTCGC CGCCTACGAG
CATGCGGGGA TCACCAACGA TGCTCGGACT CACCGGCGGC CCGCCCCAAC GCTCCGAGAT
GTCGCCGAAC TACTCACCAC ATCTGACACA CCGGATGCCT CAGCACTGGC AGCAGAGCTG
GCCCCGCACA CCTCCGGTTC CTTCTCCGGT CTGTTCGACG GCCCGACGGC ACACTCAGCC
GGCGGCCACC TCGCGGTGTT CGCGCTGCGG GAACTGCCCG ATGAGCTGAA GCCGATCGGG
ACGCTCCTCA CCCTCGATCT GATGTGGCGC CGGGTGTCAG ACCCGGCCAA CCGGCGCCGC
CGTCTGGTGG TCGTCGACGA AGCCTGGTGG CTGATGAAGG AGCCGGCGGG AGCACGGTTC
CTCTTCCGCA TGGCCAAGGC GTCGCGGAAG TGCTGGGCCG GGCTGTCAGT CGTCACGCAG
GACGCTGCGG ACCTGCTCTC GACCGAACTC GGTATGGCGG TCGTGTCGAA CGCTGCGAGC
GCGGTGCTGC TGCGTCAGGC CCCGCAGTCC GTCGACCAAA TCGCTCAGGC GTTCCGGCTC
TCGGGTGGCG AGCGCGCGTT CCTGCTATCT GCCAGCCGTG GTCAAGGCCT GGTCATGCAA
GGCAATTCGC GGGCCGCGTT CTCCTCAGTC GCCTCAACCC GTGAGGACGA GCTCTGCACA
ACCGATCCCG CGCAGCTGGC TCGGCTCGAT GAGGAGTGGA GCGCATGA
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| Protein sequence | MTSLTAALKM LPIWTTRPAH QTRNVLGLGP ASLEVGTHTL KVGDTIAATF AVADYPAEVA
AGWLEPLLSF PARIGVAVHI EPVPSPIAAD RLRKQRARLE SGRRHAASRG HLDDPATEAA
AADARELAYR VACGEGKLFG VGIYLTIHAD SADELAELTA QVRSLAEGML LRLVPATFRT
VQGWCSTLPL GLDLLKIRRT FDTEALATLF PFTSGDLPLP QNSTSAVLLG VNATDSGLVM
WDRWAAPNHN SVVLAQSGAG KSYLAKLDVL RNLYQGVEVM VIDPEQEYAR LAHAVGGTVV
SLGAPGVRIN PFDLPNTGDS SDAIRRRTLF GHTVVSVLLG RDLTAGQHAA LDGAILAAYE
HAGITNDART HRRPAPTLRD VAELLTTSDT PDASALAAEL APHTSGSFSG LFDGPTAHSA
GGHLAVFALR ELPDELKPIG TLLTLDLMWR RVSDPANRRR RLVVVDEAWW LMKEPAGARF
LFRMAKASRK CWAGLSVVTQ DAADLLSTEL GMAVVSNAAS AVLLRQAPQS VDQIAQAFRL
SGGERAFLLS ASRGQGLVMQ GNSRAAFSSV ASTREDELCT TDPAQLARLD EEWSA
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