Gene Caci_8492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8492 
Symbol 
ID8339872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9847060 
End bp9848661 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content70% 
IMG OID644961579 
Productpolysaccharide biosynthesis protein 
Protein accessionYP_003119156 
Protein GI256397592 
COG category[R] General function prediction only 
COG ID[COG2244] Membrane protein involved in the export of O-antigen and teichoic acid 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.941649 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGT CGCAGAACAT CCCTGACGCT GATTCGGAAG CCGCTCCAGG AGGCGCTCCA 
GAGGGTGCCC CGGAAGGCAT CCCGGAGGCC GCTCCCGAAT CGCTCGGCGA CCGGGTCCGC
TCCGCCGCCA AGTGGAGCCT CATCAACACC CTGCTGATCC GCATCGGCAC GTTCGCCACC
GGCGTGATCC TGGCGCGCGG GGCGCTGACG CCGCGCGACT GGGGACTGTA CGCGGTCGGC
GGCGTCGCGC AAGCGGTGTT GTTGTCGTTC AACGAGTTGG GCGTCAGCCT GGCTGTGGTG
CGCTGGGATC GCGACCCGCG CTCGTTCGCG CCGACGGTGG TCACGCTCGC GACGGCCTCC
AGCACGGCGT TGTATGTCGG GCTGTGGTTC CTGGCCCACG ACATCGCCAT CATGCTGGGC
TCGCCGGACG CGACCGGCGT CCTGCGGATC CTGTGCTTCG CGGTGGTCGT GGACGGCGTG
GCGTGCGTCC CGAACGCGGT GCTGATGCGC GAGTTCCGGC AGCGGGCGCG GCTGACGATC
GACTTGCTGA CGTTCGTCGT CAGCTCCGGG CTGACGCTGC TGCTGGCGTT CCGCGGGTGG
GGCGCGTCCA GCTTCGCCTG GGGTGGCGTG GCGGGGGTGA TGGTCGCGCT GATCGGGTGC
GGCATCGCGG CTCCCGGCTA CCTGCGTCCG GGCTGGGATC GTCAGGTCGC CCGCGAACTG
GTCCGGTACG GTGCGCCGCT CGCCGGCGCG AGTCTGTTCG TGCTGGCGAC GATGAACACC
GATAGCGCGG TCGTCGGCGC GACGCTCGGT CCGGTGGCGC TGGGCTTGTA TCGGGTGGCG
TTCACGATGT CGAGCTGGCC GGTCCGGGCG ATCTCCGAGA CGGCACGGCG CGTGTCCTTC
GCGGGATTCT CGCGCGCAGC CGTCTCCGCC CAAACGCTCA CCGACGGGTT CACCAGCGGT
CTGTCCCCGC TGCTCATCGC CTCGGTCCCA GCCTGCGCAC TCCTGGCAGC GCTGCCGGGT
CCGATCATCC GGTCGGTCTA CGGCGATCAG TGGACAGGCG CCGCCGGAGC CTTGCGCTAC
CTGGCGATTC TCGGCTTGCT CAGGATCATC TTCGAGCTCT GTTACGACTT CATGGTCGCC
GCCGGTCGCT CGCGAGCGCT CCTGACGGTC CAAGCCCTGT GGCTGGCCGC GCTGATCCCC
GCGCTCATCT TCGGCGCGCA TCACAACGGG ATCAGCGGTG TCGGCGCCGG GCACATCGTG
GTCGCGGCGG GCGTCATCGG ACCCGCGTAC GTCCTCACGC TGCGCGCGGT GGGCATCCAT
CCGCTCCGCA TCGCGGCGGT GACGTGGCGA CCGGTGCTGG GCGGTGGTGT CGTCGTGGCG
GTCGCCGTCG CGGTGAACCG CGTCGCGGGC AACTCCGATA TCGCGCTCGC TGGGGCGTGC
TTCGCGGCGA TGGCTGCGTA CGTGCCGGTC GCGGTGCCGG CGTCGGCGAT GCGGCAGGTG
TGGGGCAGGG TGAGTTCGCG GTTCGGTCGG CGGTCGACCG TGCTGCCGCC CTCCGTGATC
GCTGATGAAC GGCTCACTTC TGGGGAGTCG GCTTCGGTTT GA
 
Protein sequence
MSQSQNIPDA DSEAAPGGAP EGAPEGIPEA APESLGDRVR SAAKWSLINT LLIRIGTFAT 
GVILARGALT PRDWGLYAVG GVAQAVLLSF NELGVSLAVV RWDRDPRSFA PTVVTLATAS
STALYVGLWF LAHDIAIMLG SPDATGVLRI LCFAVVVDGV ACVPNAVLMR EFRQRARLTI
DLLTFVVSSG LTLLLAFRGW GASSFAWGGV AGVMVALIGC GIAAPGYLRP GWDRQVAREL
VRYGAPLAGA SLFVLATMNT DSAVVGATLG PVALGLYRVA FTMSSWPVRA ISETARRVSF
AGFSRAAVSA QTLTDGFTSG LSPLLIASVP ACALLAALPG PIIRSVYGDQ WTGAAGALRY
LAILGLLRII FELCYDFMVA AGRSRALLTV QALWLAALIP ALIFGAHHNG ISGVGAGHIV
VAAGVIGPAY VLTLRAVGIH PLRIAAVTWR PVLGGGVVVA VAVAVNRVAG NSDIALAGAC
FAAMAAYVPV AVPASAMRQV WGRVSSRFGR RSTVLPPSVI ADERLTSGES ASV