Gene Caci_8400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8400 
Symbol 
ID8339780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9728400 
End bp9729587 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content73% 
IMG OID644961487 
ProductDNA polymerase III subunit delta' 
Protein accessionYP_003119064 
Protein GI256397500 
COG category[L] Replication, recombination and repair 
COG ID[COG2812] DNA polymerase III, gamma/tau subunits 
TIGRFAM ID[TIGR00678] DNA polymerase III, delta' subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGGCG ACAGCGCAGC GTTCCAGCCC TATGGCGTCT GGACCGACCT GGTCGGCCAG 
GACCACATCA GCACCGACCT GGTCCAGGCG GCGCTCGGCA ACGGCATGAC CCACGCCTGG
CTGCTCACCG GACCGCCCGG CTCGGGTCGG TCCACCGCGG CGCGCGCCTT CGCGGCGGCG
CTGCAGTGCA CGACAGCCGG CGAGCCGGGC TGCGGTTACT GCCTGGGCTG CCGGACCGTC
CTCGACGGCA CGCATCCCGA CGTGCTCCAG CTCGCCACCG ACCAGCTCTC GATCGGCGTG
GCCGACACCC GCGGCCTGGT GCGGCGCTCG TCGATGACCC CGTCCTCGGG CCGCTGGCAG
GTCCTGCTCA TCGAGGACGC CGACCGGCTC ACCGAGGCGG CCGGCAACGT CCTGCTGAAA
GCGGTCGAAG AGCCCTCGCC GCGCACGATC TGGATCCTGT GCGCCCCGGG CCGCGACGAC
ATGCTCCCCA CGATCCGCTC CCGCTGCCGC CACCTGCTGC TGCGCACGCC GCCCTCGTCG
GCGGTCGCGG AGATCCTGGT GCGGCGCGAC GGAGTGGACC CGATCCGCGC CCGCGAGGCG
GCGCGCGCTG CCCAGGGACA CATCGGGCGC GCTAAGCGTT TGGCGACGGA TGACGAGGCG
CGGGCGAAAC GCAAGGCGGT CCTGGCGCTG GCGTCGTCGC TGACCGACAT AGGGTCGGCG
CTGTCGGCGG CGCAGAAGCT GGTCGACGCG ACCATCGCCG AGGCGAAGCA CGACGCCGAC
GAGCGGAACG TCATAGAGAC CGCGGACATG CGGCTCGCGC TGGGGTACCA GGAGGGGTCG
CGCAAGGCGG TTCCCGGCGC CGCCGGAGCG CTGAAGGATC TGGAGTCGCG GCAGAAGAAG
CGCGCGACCC GGATGCAGCG GGACGCTCTG GACCTAGCGC TGGTGGACCT CGCGGCGTTC
TACCGGGACG TGCTGGCCGT CCAGCTCGGT GCGATCGGCG GTCCGGGCGG TGACGTCACC
GAGCCCATCC ACGACGACCA GTACGCGGCC GTGCGCAAGA TCGCCGCAGC GGGGACGCCG
GAGGCGACGT TGCGGCGGAT CGAGGCGGTG CTCGCCTGCC GGAAGGCGGT GGAGCGGAAC
GTGGCGCCGC TGTTGGCGGT GGAAGCCATG GCCGTGAACC TGCGCTAG
 
Protein sequence
MSGDSAAFQP YGVWTDLVGQ DHISTDLVQA ALGNGMTHAW LLTGPPGSGR STAARAFAAA 
LQCTTAGEPG CGYCLGCRTV LDGTHPDVLQ LATDQLSIGV ADTRGLVRRS SMTPSSGRWQ
VLLIEDADRL TEAAGNVLLK AVEEPSPRTI WILCAPGRDD MLPTIRSRCR HLLLRTPPSS
AVAEILVRRD GVDPIRAREA ARAAQGHIGR AKRLATDDEA RAKRKAVLAL ASSLTDIGSA
LSAAQKLVDA TIAEAKHDAD ERNVIETADM RLALGYQEGS RKAVPGAAGA LKDLESRQKK
RATRMQRDAL DLALVDLAAF YRDVLAVQLG AIGGPGGDVT EPIHDDQYAA VRKIAAAGTP
EATLRRIEAV LACRKAVERN VAPLLAVEAM AVNLR