| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8305 |
|---|
| Symbol | |
|---|
| ID | 8339684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 9623924 |
|---|
| End bp | 9625510 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644961391 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003118969 |
|---|
| Protein GI | 256397405 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.817018 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAC CGGTCATGCC CGCGATCGAG GAGCTGCTTC ACGCGGCGTT CGACGCCGCG
CCGATGCCGG CGGTGCTCGC CGACGGTCCC GATCACCTGC TGCTGGCCGC CAACGACGCG
TGCCTGGCCG ATTTCGGCTC GGTGGCGCTG CGGCTGCCGG TCGGCGACGC GCTGCCGGAG
CTGGCCGGCA CCGGTCTGCC CGCGGCGATG GACCAGGCTT ACGACACCGG ACGCGCGGTG
CTGCTTCAGG ACCGCATGGT CCGGCGGCGC GGCGGGGACC GGTACTACAC GCTGGTGTGC
GTGCCGGCCA GCGGCGGCGT CGCGGTGTTC TGCCGTGACG AGACCGAGCG GGTGCGGCGC
GAGCAGGCGC TGCTGGAGGA GGAGACCCGC AACCGGAACA TGGCGGTGAT GCTGCAGCGC
TCGCTGCTGC CGCAGCGGAT CATCCAGCCC GACGAGATCC GGCTCGCGGC GTGCTACCTG
CCGGCGCTGG TGCGCTACGA GGACGCCTCG CTCGACGCCG AGCCGGTCCT GGAGGTCGGC
GGCGACTGGT ACGACGCGAT CCCGCTGGGC GCCGGCCGCA CCGCGCTGGT GGTCGGCGGC
GTCACGCCGG AGGCCGGCGG CGTCGGGGTG CGCGCGGCGG CGGTCATGGG CCGGCTTCGC
GCGGCGGTGC GGGCGTACGC CTCGCAGAAC CTGCCGCCCG GCGAGGTGAT GTACCACCTG
GACCGGCACG CGCTGGACTT CGACGGCGAG CGCACCGGCT CGCCGGTCGC GACGCTGGTG
TACGCGGTGC ACGACGCGGA CAGCGGCTCG CTGACCTACG CGAACGCCGG GCACCTGCCG
CCGCTGCTAC GGCTGCCGGA CGGCTACGTG GCGGTGCTGG AGGGCGCCTC AGGGCCCTCG
CTCGGCAGCG GGGACTGGAC GTGGCAGGAG GCTGCGGTGG CGGTGCCGCC GGGCTCGTAT
CTGGCGTTCT ACACGCAGGG ACTGCTGGAG CGCGGAACCG GCGACCTGCG CCGCGTGTTC
GCCCGCGCGC CCGAGGAGGA GCCGCCCCGC CCCGGCGCGG GCCCGGTGGA CCTGGTCCGC
GACCACATCC TGGCCTCCAT CGACCCGCTG TCGGTCTCCA GCGGCGGCCT GGACCCCTCC
GGCGCGGTGC GCACGGACGA CGTGGCACTG CTGGTCGCGC ACGTCCCGGC ATGGACCGGC
GCCCACGCGG CCCTCTTCCG CTCGGCATCG GTGGAACTGG TCGGCGGCCC GGAGATCGCC
GCCCACGCCC GCAGCTACAC CGCCGGCGTC CTGACCACCT GGGGCGTCGC CGACGACCTG
ACCGACACCG CCGTCCTCGC CGTCAGCGAA CTCGTCGCCA ACGCCGTCAC CCACGGCACC
GCCCCGGTGG TCCTCCGCCT CCGCCGCACC GACCGCCGCC TGATCATCGA CGTCGCCGAC
CAGTCCGACC ACCTCCCCCG CCGCCGCCTG GCCCGCGAAA CCGACGAAGA CGGCCGCGGC
ATCAGCATCA TCGCGGCAGT CGCCGCCGCC TGGGGCGCCC GCCCGCTGCC GGAAGGGAAG
TCGGTGTGGT GCGAGTTCGA GTTCTGA
|
|---|
| Protein sequence | MKSPVMPAIE ELLHAAFDAA PMPAVLADGP DHLLLAANDA CLADFGSVAL RLPVGDALPE
LAGTGLPAAM DQAYDTGRAV LLQDRMVRRR GGDRYYTLVC VPASGGVAVF CRDETERVRR
EQALLEEETR NRNMAVMLQR SLLPQRIIQP DEIRLAACYL PALVRYEDAS LDAEPVLEVG
GDWYDAIPLG AGRTALVVGG VTPEAGGVGV RAAAVMGRLR AAVRAYASQN LPPGEVMYHL
DRHALDFDGE RTGSPVATLV YAVHDADSGS LTYANAGHLP PLLRLPDGYV AVLEGASGPS
LGSGDWTWQE AAVAVPPGSY LAFYTQGLLE RGTGDLRRVF ARAPEEEPPR PGAGPVDLVR
DHILASIDPL SVSSGGLDPS GAVRTDDVAL LVAHVPAWTG AHAALFRSAS VELVGGPEIA
AHARSYTAGV LTTWGVADDL TDTAVLAVSE LVANAVTHGT APVVLRLRRT DRRLIIDVAD
QSDHLPRRRL ARETDEDGRG ISIIAAVAAA WGARPLPEGK SVWCEFEF
|
|---|
| |