Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_7876 |
Symbol | |
ID | 8339252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 9134482 |
End bp | 9136695 |
Gene Length | 2214 bp |
Protein Length | 737 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644960959 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_003118540 |
Protein GI | 256396976 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR02696] guanosine pentaphosphate synthetase I/polynucleotide phosphorylase [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.017282 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCGGAGG GTGTTTTCAC CACCGAGGCC GTGATCGACA ACGGCCCGTT CGGCCAGCGC ACCGTGCGCT TCGAGACAGG CCGTCTGGCC CGTCAGGCCG CCGGCTCCGT CGTGGCCTAC CTGGACGAGG AGACGATGGT CCTTTCGGCG ACCACCGCCT CGAAGTCCCC CAAGGACTCT CTCGACTTCT TCCCGTTGAC GGTCGATGTC GAGGAGCGCA TGTACGCCGT GGGCCGTATC CCCGGCTCCT TCTTCCGGCG CGAGGGCCGT CCGAGTGAGG ACGCGATCCT CACCTGCCGG CTCATCGACC GGCCGCTGCG TCCGTCCTTC GCCAAGGGCC TGCGCAACGA GGTGCAGGTC GTGGCCACGA TCATGGCGCT GAACCCGGAC CACCTGTACG ACGTCGTGGC GATCAACGCC GCCTCGGCCT CCACGCAGCT GGCCGGCCTG CCCTTCTCCG GTCCCATCGG CGGCGTGCGC GTCGCGCTGA TCCAGGACCG CTGGGTGGCC TTCCCGACCC ACACCGAGCT CGCCGACGCC GTGTTCGACA TGGTCGTGGC CGGCCGGACG CTGGAGGACG GCGACGTCGC GATCATGATG GTCGAGGCCG AGGCCACCAG CCAGACGGTG TCCCTGGTCG CCGGCGGTTC CACCGCCCCG ACCGAGGAAG TCGTCGCCGA CGGCCTGGAG GCCGCCAAGC CCTTCATCAA GGCGCTGTGC GTGGCCCAGC AGGAGCTGGC CTCGCAGGCC GCCAAGGCCA CCGCCGAGTT CCCGCGCTTC CTGGACTACC AGGACGACGT GCTGGAGGCG GTGAGCGCCA CGGCCAAGAA CGAGCTGTCC AACGCGCTGA CCATCGCCGG CAAGCACGAG CGCGAGGAGG AGCTGGACCG CGTCAAGGCG CTGGTCGTGG AGAAGCTCGC GCAGCAGTTC GAGGGTCGCG AGAAGGAGAT CGGCGGGGCG TTCCGCGCCC TGACCAAGAA GCTGGTCCGC GAGCGCATCA TCCGCGACCA GGTCCGCATC GACGGCCGCG GCGTGCGCGA CATCCGCCCG CTGTCCGCCG AGGTCGAGGT CGTGCCCCGC GTGCACGGCT CGGCGCTGTT CGAGCGCGGC GAGACCCAGA TCCTGGGCAT CACCACGCTG AACATGCTCC GGATGGAGCA GCAGCTGGAC ACGCTGAACC CCGAGACGCG CAAGCGCTAC ATGCACAACT ACAACTTCCC GCCGTACTCC ACCGGCGAGA CCGGCCGCGT GGGTTCGCCC AAGCGCCGCG AGATCGGCCA CGGCGCCCTC GCCGAGCGCG CGCTGGTGCC GGTCCTGCCG ACCCGCGAGG AGTTCCCCTA CGCGATCCGC CAGGTGTCCG AGGCTCTCAG CAGCAACGGC TCCACCTCGA TGGGCTCGGT CTGCGCCTCG ACCATGTCCC TGCTGAACGC CGGTGTGCCG CTGAAGGCCC CGGTCGCCGG TATCGCGATG GGCCTGGTCT CCGCGGAGAT CGACGGCAAG ACCGAGTACG TCGCGCTGAC CGACATCCTC GGCGCCGAGG ACGCCTTCGG CGACATGGAC TTCAAGGTCG CCGGCACCAA GGAGTTCGTC ACCGCGCTGC AGCTGGACAC CAAGCTGGAC GGCATCCCGG CCTCGGTCCT GGCCGCCGCC CTGAAGCAGG CCAAGGACGC GCGTCTGCAC ATCCTGGACG TCATGATGGA AGCCATCGAC GTCCCGGACG AGATGTCCGA GTTCGCGCCG CGCATCATCT CGGTGAAGAT CCCGGTGGAC AAGATCGGCG AGGTCATCGG CCCGAAGGGC AAGATGATCA ACCAGATCCA GGAGGACACC GGCGCCGAGA TCACCATCGA GGACGACGGC ACCATCTACA TCGGCGCCTC CAACGGGGCC GCGGCCGAGG CCGCGCGCGT GACGATCAAC CAGATCGCCA ACCCCACGAT GCCGGAGGTC GGCGAGCGCT ACCTGGGCAC CGTGGTGAAG ACCACGACCT TCGGCGCGTT CGTCTCGCTG ATGCCGGGCC GCGACGGCCT GCTGCACGTC TCCCAGCTCA AGAAGCTGGC CGGCGGCAAG CGGGTGGAGA ACGTCGAGGA CGTGGTGAAG GTCGGGGACA AGCTGCAGGT GGAGATCGCC GAGATCGACT CCCGCGGCAA GCTCTCGCTG ATCCCCGTGC TGCCCGACGA GGAGAGCAAG CCGGCCGAGG CCAAGGCGGA GTAA
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Protein sequence | MSEGVFTTEA VIDNGPFGQR TVRFETGRLA RQAAGSVVAY LDEETMVLSA TTASKSPKDS LDFFPLTVDV EERMYAVGRI PGSFFRREGR PSEDAILTCR LIDRPLRPSF AKGLRNEVQV VATIMALNPD HLYDVVAINA ASASTQLAGL PFSGPIGGVR VALIQDRWVA FPTHTELADA VFDMVVAGRT LEDGDVAIMM VEAEATSQTV SLVAGGSTAP TEEVVADGLE AAKPFIKALC VAQQELASQA AKATAEFPRF LDYQDDVLEA VSATAKNELS NALTIAGKHE REEELDRVKA LVVEKLAQQF EGREKEIGGA FRALTKKLVR ERIIRDQVRI DGRGVRDIRP LSAEVEVVPR VHGSALFERG ETQILGITTL NMLRMEQQLD TLNPETRKRY MHNYNFPPYS TGETGRVGSP KRREIGHGAL AERALVPVLP TREEFPYAIR QVSEALSSNG STSMGSVCAS TMSLLNAGVP LKAPVAGIAM GLVSAEIDGK TEYVALTDIL GAEDAFGDMD FKVAGTKEFV TALQLDTKLD GIPASVLAAA LKQAKDARLH ILDVMMEAID VPDEMSEFAP RIISVKIPVD KIGEVIGPKG KMINQIQEDT GAEITIEDDG TIYIGASNGA AAEAARVTIN QIANPTMPEV GERYLGTVVK TTTFGAFVSL MPGRDGLLHV SQLKKLAGGK RVENVEDVVK VGDKLQVEIA EIDSRGKLSL IPVLPDEESK PAEAKAE
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