| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7832 |
|---|
| Symbol | |
|---|
| ID | 8339208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 9087207 |
|---|
| End bp | 9087968 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644960916 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003118497 |
|---|
| Protein GI | 256396933 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0353896 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC CAGCAGCCCC GAACGGGACC CCCGAGGTCC CGCCCCCGCC GCCGTGGGAG
CGCACCGCGC GCAAGGCCAA AGCGCCCGCG CGCACGCCCC TGAGCCAGGA GGCGATCGTC
GCCACGGCGC TGCGCGTCCT GGAGTCCGAC GGCTATGAGG CGCTGTCCAT GCGCCGCGTC
GCGGCGGACC TGGGCACCGG TGCGGCCTCC CTGTACGCGC ACGTCGCCAA CAAGGAAGAG
CTGCTCAGGC TGTGCATCGA CCGGGTCTTC GCGGACGTGG AATTCCCGCC GCCGGACCCG
GACCGCTGGG TGGAGCAGCT TCGGGACGCC ATGCGCGAGA CGCGCCGCAT CCTGCAGGCG
CACCCGGGCC TGGCCCGCGC CCTGCTCGGA CGGGTCCCGA TGGGCCCGAA CGGACTGCGG
CTGATCGAGG GTTTCATGGG CGTGCTGCGG CTGGGCGAAC TCCCGGACCG GGTCGCCGCG
TGGGCCGGGG ACGTGGTGAC GCTGTACGTG GTGGCGAGCG TCTTCGAGGA CGACATCCGG
CACACGCTGC ACGGCGACAC CTCCGAGGAG GACGTCGAGG CGTGGGCCGA AGAGATGAAG
GGCTATATCA AGACCCTGCC CGCGGCGGCG TTCCCGAACA TGCTGGCGCT GGCCGATCCG
ATGTTCGAGA CCGGCGGCCC GGACGGGCGC TTCGAGTTCG GACTCGATCT GATGCTGCGC
GGTCTGGCCT CCCACTCGCG GCGGGGAACC GGCGAGGCTT GA
|
|---|
| Protein sequence | MAKPAAPNGT PEVPPPPPWE RTARKAKAPA RTPLSQEAIV ATALRVLESD GYEALSMRRV
AADLGTGAAS LYAHVANKEE LLRLCIDRVF ADVEFPPPDP DRWVEQLRDA MRETRRILQA
HPGLARALLG RVPMGPNGLR LIEGFMGVLR LGELPDRVAA WAGDVVTLYV VASVFEDDIR
HTLHGDTSEE DVEAWAEEMK GYIKTLPAAA FPNMLALADP MFETGGPDGR FEFGLDLMLR
GLASHSRRGT GEA
|
|---|
| |