| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7708 |
|---|
| Symbol | |
|---|
| ID | 8339084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 8944452 |
|---|
| End bp | 8945513 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644960792 |
|---|
| Product | RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily |
|---|
| Protein accession | YP_003118373 |
|---|
| Protein GI | 256396809 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.851755 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGCCT TCGAGCCGGA CGAGATCCCA GCCGCCCGCC GGGCCGGGTA CGGCGAGGGG
CAGCGGGGAA CGCCCGCGGC CGCCGCCGGG GACGAGGACA CGCCGGACGC TCCGGACGCC
CCGGACGAGC CCGACACCGA GGCCGAGGAC GGCGACTTCG ACGAGCCCAG CCTGGAGATC
GACGAGCTCG GCGTGGTCTT GGAGCACGAC GAGCCGGACA CCGAGACCGA CGGCGAGACC
GCCGCCCCGG CCGCGACGAC CTCCTTCCCC CTGCGCCGCC CGCCGCGCCA GGGCGGCCCG
CACGCCGAGG CGCACGCCCG CGCCCGCGAA CTGTTCGCCC GCCTGAACGA GCTCCCCGAG
GGCTCCACCG AGCGCAAGCA GATCCGCGAC GAGCTGGTCC AGATGCACCT GCCCCTGGTG
GAGCACCTGG CCCGGCGCTT CCGCAACCGC GGCGAGCCGC TGGACGACCT GACCCAGGTG
GCGACCATCG GCCTGATCAA GTCCGTCGAC CGCTTCGACA CCGAGCGCGG CGTGGAGTTC
TCCACCTACG CCACACCGAC CGTCATCGGC GAGATCAAGC GCCACTTCCG CGACAAGGGC
TGGGCGGTCC GCGTCCCCCG CCGCCTCCAG GAGCTCCGGC TGTCGCTGAC CAGCGCCACC
TCCGAGCTCT CGCAGCGCAA CCGCCGCTCC CCCACCGTCG CCGAACTGGC CGAGTACCTC
AAGATCTCCG AAGAAGAGGT CCTGGAAGGC CTGGAATCGG CGAACGCCTA CTCCACCCTG
TCCCTGGACG TCTCCGAAGG CGGCGACGAG GACTCGCCGG CCGTCGCGGA CTCCCTCGGC
AGCGAGGACG AGGCACTCGA GGGCGTGGAG TACCGGGAGT CGCTCAAGCC GCTCCTGGAG
CAGCTGCCGC CGCGCGAGAA GAAGATCCTG CTGCTTCGCT TCTTCGGCAA CATGACGCAG
TCGCAGATCG CCGAGGAGAT CGGCATCTCG CAGATGCACG TCTCCCGCCT GCTGGCGCGG
ACCCTGGAGC AGCTGCGGGC GCAGCTGCTC GTGGACGAGT GA
|
|---|
| Protein sequence | MRAFEPDEIP AARRAGYGEG QRGTPAAAAG DEDTPDAPDA PDEPDTEAED GDFDEPSLEI
DELGVVLEHD EPDTETDGET AAPAATTSFP LRRPPRQGGP HAEAHARARE LFARLNELPE
GSTERKQIRD ELVQMHLPLV EHLARRFRNR GEPLDDLTQV ATIGLIKSVD RFDTERGVEF
STYATPTVIG EIKRHFRDKG WAVRVPRRLQ ELRLSLTSAT SELSQRNRRS PTVAELAEYL
KISEEEVLEG LESANAYSTL SLDVSEGGDE DSPAVADSLG SEDEALEGVE YRESLKPLLE
QLPPREKKIL LLRFFGNMTQ SQIAEEIGIS QMHVSRLLAR TLEQLRAQLL VDE
|
|---|
| |