Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_7273 |
Symbol | |
ID | 8338641 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 8446272 |
End bp | 8450276 |
Gene Length | 4005 bp |
Protein Length | 1334 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 644960354 |
Product | ribonuclease, Rne/Rng family |
Protein accession | YP_003117943 |
Protein GI | 256396379 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.584689 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTCGACA ACGAGCCCAC CGGCGTCCCC GGCGAACAGC CGGACCAGAC GTCAGACGCG CAGGACGCGG CCACGGCCGC CACCAACGAA GGCGGGGCGC CCCAGCGCCA GCGCCGCCGG GCGGCCAGCC GCCCGGCCGG CCCGCCGCAG CCCCCGGAGG CGGGGTCCGA GGCCGCGGCC TCCGGCGACG CCGCCGCGGA GCCCGAGAGC AAGCCCAAGC GGGCGCGCAA GACCGCGGCC AAGAAGGTCG CCGCCCCGGA ACCCGAGCCG GAGACGGCCG AGCCCGGGGA CAGCGCATCC GCTGCCAAGA AGACGACGCG TGCCCGCACG CGCAAGAAGG CTGCCGAGGC CGAGCCGGTC GCGGCCGGCG AGGCCCGGGA CTCCGGCTCC GCCACCGCGC AGACCGCCCC GACCGAGCAG GCGCAGCCCG CCGCGGACAC CGCCGACGAC GCCGCCAAGG GTGCGCGGAC GCGTACCCGC CGCCGCGCCA CGTCGGCCGG GACCGCCGCC GAGCAGGTGA CCGGCGCCGA TTCGGGTGCT GAGAGCGCTG AGGGCGCCAA GACCGCCGAC ACCGCTGCCG CTGCTGCCGG GACCGGTCGC TCCGAGACCG CTGCCGCCGG GACCGGTCGT ACCGGTGCCG CCAAGCGCGG GACCCGCGCC GCAGCCGCCG ACCGCGACCA GGCTTCCGCC GCCGCTGCCG ATACCGCCTC GGCTCAGGTC GACACCTCGT CCGACCAGGC CGAGACCAGC CAGTCGGACA CCAGCCAGGC CGACACCGCC GGCGCGTCCC GCACCCGCAC CCGCCGCCGC GCCACCTCGG CCGGCACCGC GGCCCAGCAG GCGAGCGCCC CCGAGGCTGC CACCGCCCCG CAGGGCACCG CCGAGCAGGC CGACGACCAG TCCGCCGACT CGGGCTCCCG CCCGACCGGT CTCAGCTCGC CGTTCGCGAA CCCGTTCGCG GCGCCGCAGC TGCCTGCGAA GACGGCCAAG AAGGCCGCCC CGGCGCAGGA GACACCCACC GAGCAGCCCG GCAAGCCGGA GTTCAAGGCG GAGCCCAAGG CCCAGGCCGA AGCCCCGACG GTGCCTGTTG CAGCTGCTGC TGCCGCCTCG GACGACGACG CCGAGTCCGG CGCCAAGTCC AAGCGCACCC GCCGCCGCGC CGCCTCCGCT CCCGCGGGCC CGCCGCGCGC CCTGGAAGAG GCCGCCGAGG GCCAGCAGAC TCAGCAGGGC CAGGACAAGC AGGGCCAGGA CAAGCAGGGC CAGCAGGACA AGCAGGGCCA GGCTCAGCAG GACAAGCAGG ACAAGCAGGA CAAGCCCCGC CAGGGCAGGC AGTCCCGCCA GAGCAAGCAG GACAAGGCCC AGCAGTCCCA GCCCGCCGCC CAGGACACTG CGACCGCCCA GACTGCCGCC CAGGACGCCG AGCAGCCCGT CGACCTCGAC AGCCTGTCCC CGGCCGAGCG GGCCCGCGCC ATCATCGCCG CGCGCGCCGC CGCGCCGGCC GCCGGCGTGC CGCTGTTCCA GGCGCCCGAC CTGACCACCG CCGCCGCGCA GAAGGCCGCC GCCAAGGCCG CCAAGGCCGA GGCGTCGGAC ACCGAGGCCG AAGCCGAGCC CGAGGCCGAA GCCGAGGAGG AGCCGGCGCC GACCCGCCGC ACCCGGACGC GCAACCGCAA CCGGAACCGC TCTGAGCAGG CCGAGCCGGC GACCGACAGC GCCGAGGCCG AAGCCGAGGA CGACGAAGAG GACGACGACG AGGGCACCGG CTCCTCCAGC CGCCGCCGTC GCCGGCGCCG CCGCCGGGCC GGTGGCGAGT CCATGGAGCC CGGTCCGGAC GACCCGCCGA ACACCGTGGT CAAGGTCCGC GAGTCCCGCG TGCGCAGCCG GGACCGCAAG GGCGGCGGCC TGGCGGACGA CGACGTCCAG GGCGTGCGCG GCTCGACCCG CCTGGAGGCC AAGAAGCAGC GCCGCCGCGA GGGCCGGGAC ACCGGCCGCC GCCGCGCGCC GCTGATCACC GAGGCCGAGT TCCTCGCCCG GCGCGAGAGC GTCGAGCGGG TCATGGTCGT GCGCCAGAGC GGCGACCGGA CCCAGATCGG CGTCCTGGAG GACGGCGTGC TCGTCGAGCA CTACGTCAAC CGCGCGCAGT CCGCGTCCTA CGTCGGCAAC GTGTACCTGG GAAAGGTCCA GAACGTGCTG CCCTCGATGG AGGCCGCGTT CGTCGACATC GGCAAGGGCC GCAACGCCGT GCTGTACGCC GGCGAGGTCA ACTTCGAAGC CGCCGGGATC ACCGGCCAGG CCAAGCGCAT CGAGAGCGTC CTGAAGAGCG GCCAGGCGGT CCTGACCCAG GTCACCAAGG ACCCGATCGG CCACAAGGGC GCCCGGCTGA CCAGCCAGAT CTCGCTGCCC GGCCGCTACC TGGTCTACGT GCCCGAGGGC ACCATGACCG GGATCAGCCG CAAGCTGCCG GAGAACGAGC GCAACCGCCT CAAGACCATC CTGAAGGCGG TCGTCCCCGA GCACGCCGGC GTCATCGTGC GCACCGCGGC CGAGGGCGCC ACCGAGGACG AGCTGCGCCG CGACGTGGAG CGGCTGTCCG CGCAGTGGGA GGAGATCCAG CGCAAGGCCA AGACCTCGGC CGGCTCGGCT CCGACCCTGC TGTACGGCGA GCCGGACCTG ACCGTGCGCG TGGTGCGCGA CATCTTCAAC GAGGACTTCA GCAAGCTGGT CGTCTCCGGC GACCAGGCCT GGGACACCAT CCGCGAGTAT GTCGGGGGCG TCGCCCCGGA CCTGGCGCCG CGGCTGGAGC GCTGGACCTC CGAGCAGGAC ATCTTCGCCG TGCACCGGGT GGACGAGCAG CTGGCCAAGG CGCTGGACCG CAAGGTCTGG CTGCCCTCCG GCGGCTCGCT GGTCATCGAC CGCACCGAGG CGATGGTCGT GATCGACGTC AACACCGGCA AGTTCACCGG CTCCGGGGGC AACCTGGAGG AGACGGTCAC CCGCAACAAC ATCGAGGCGG CCGAGGAGAT CGTCCGCCAG CTGCGGCTGC GCGACCTCGG CGGCATCATC GTCATCGACT TCATCGACAT GGTCCTGGAG TCCAACCGCG ACCTGGTGAT GCGCCGGCTG CTGGAGTGCC TGGGCCGGGA CCGGACCAAG CACCAGGTGG CCGAGGTCAC CTCCCTCGGT CTGATCCAGA TGACCCGCAA GCGCGTGGGC CAGGGCCTGC TGGAGGCCTT CTCCGAGACC TGCGACAAGT GCAACGGCCG CGGCGTGCTG GTCCACATGG AGCCGGTGCC GCACGGCCAC GGCCACGGGT CCGAGGACGC CGACCGCGAC GGCCGCAGCC AGCAGAACAA GGGCGGCGGC AAGCAGGAGG AGTCCCGCGC CGACGGCGGC CAGGGCGGCG CGGAGGAGGA GCACGAGGGC GGCCGCGGCC GGCGCAAGCG GCGCAAGTCG CACGGCCACG CCGACCGCCA GCAGCACTTC GACCCGCAGT ACGACGTGGA CGGCGTGCCG GAGGAGTTCC AGGACTTCGC CGACGGCGAG CAGGCGCCGG CCGGCCCGGT CACCGTGACC AAGGTGGCCC GGGTCGCCGC GGACGGCGCC GGCGTCGCGG ACGACGCCGA CACCGACCGC GACGAGGACG AGGCCGCCGA GCTGTCCGAG CACAGCGCCG TGGACCGCGT CCCGAGCCAC GAGCACGTGG TGGCTCCGGT CGTGACCCCG GACGACGTGG TCGCCGCCGA GGAGGCCGAC GTCACCGAGC GGCTGGCCGT CGGCGACGCC CAGGCGCACA CCGTCTACGT CCCGCGCACC GGCGGCGCCG TGAGCGCCTC CGAGGCGGAC AAGGACGAGA CCGAGGCGGA GGTCGCCGAG CCGTCCGCGG TCGCCGCGAT GGCCGTCGCC CCGGCGCCGG CCGCCGAAGC GGACCCCGAC GCCCCCAAGC GCCGTGGCCT GCGGGTGCGC CGTGCGGCCA AGCGCCCGGC GGGTCCTCCG GCGGCCCACA ACTGA
|
Protein sequence | MLDNEPTGVP GEQPDQTSDA QDAATAATNE GGAPQRQRRR AASRPAGPPQ PPEAGSEAAA SGDAAAEPES KPKRARKTAA KKVAAPEPEP ETAEPGDSAS AAKKTTRART RKKAAEAEPV AAGEARDSGS ATAQTAPTEQ AQPAADTADD AAKGARTRTR RRATSAGTAA EQVTGADSGA ESAEGAKTAD TAAAAAGTGR SETAAAGTGR TGAAKRGTRA AAADRDQASA AAADTASAQV DTSSDQAETS QSDTSQADTA GASRTRTRRR ATSAGTAAQQ ASAPEAATAP QGTAEQADDQ SADSGSRPTG LSSPFANPFA APQLPAKTAK KAAPAQETPT EQPGKPEFKA EPKAQAEAPT VPVAAAAAAS DDDAESGAKS KRTRRRAASA PAGPPRALEE AAEGQQTQQG QDKQGQDKQG QQDKQGQAQQ DKQDKQDKPR QGRQSRQSKQ DKAQQSQPAA QDTATAQTAA QDAEQPVDLD SLSPAERARA IIAARAAAPA AGVPLFQAPD LTTAAAQKAA AKAAKAEASD TEAEAEPEAE AEEEPAPTRR TRTRNRNRNR SEQAEPATDS AEAEAEDDEE DDDEGTGSSS RRRRRRRRRA GGESMEPGPD DPPNTVVKVR ESRVRSRDRK GGGLADDDVQ GVRGSTRLEA KKQRRREGRD TGRRRAPLIT EAEFLARRES VERVMVVRQS GDRTQIGVLE DGVLVEHYVN RAQSASYVGN VYLGKVQNVL PSMEAAFVDI GKGRNAVLYA GEVNFEAAGI TGQAKRIESV LKSGQAVLTQ VTKDPIGHKG ARLTSQISLP GRYLVYVPEG TMTGISRKLP ENERNRLKTI LKAVVPEHAG VIVRTAAEGA TEDELRRDVE RLSAQWEEIQ RKAKTSAGSA PTLLYGEPDL TVRVVRDIFN EDFSKLVVSG DQAWDTIREY VGGVAPDLAP RLERWTSEQD IFAVHRVDEQ LAKALDRKVW LPSGGSLVID RTEAMVVIDV NTGKFTGSGG NLEETVTRNN IEAAEEIVRQ LRLRDLGGII VIDFIDMVLE SNRDLVMRRL LECLGRDRTK HQVAEVTSLG LIQMTRKRVG QGLLEAFSET CDKCNGRGVL VHMEPVPHGH GHGSEDADRD GRSQQNKGGG KQEESRADGG QGGAEEEHEG GRGRRKRRKS HGHADRQQHF DPQYDVDGVP EEFQDFADGE QAPAGPVTVT KVARVAADGA GVADDADTDR DEDEAAELSE HSAVDRVPSH EHVVAPVVTP DDVVAAEEAD VTERLAVGDA QAHTVYVPRT GGAVSASEAD KDETEAEVAE PSAVAAMAVA PAPAAEADPD APKRRGLRVR RAAKRPAGPP AAHN
|
| |