| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7080 |
|---|
| Symbol | |
|---|
| ID | 8338447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8230506 |
|---|
| End bp | 8232014 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644960161 |
|---|
| Product | GTP-binding proten HflX |
|---|
| Protein accession | YP_003117751 |
|---|
| Protein GI | 256396187 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2262] GTPases |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR03156] GTP-binding protein HflX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.750227 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAT CCCACAAGGA CGCTGCCCGC GACGAGGTCT ACGCATTGAA CGACCACGAC
ACGCCGGAAG CCGAGTGGGA CACCGAGGAC GCCTTCGACG CGCCGGCCCC GCTCTACCGC
AACCGGTGGG CCGACTCCCG GCACGACGGC GAGCAGTTCG ACCTGGAGGA GCGTGCCTCG
CTCCGCCGCG TGGCCGGACT GTCCACCGAA CTCGAAGACG TCACCGAAGT CGAGTACCGG
CAGCTGCGCC TGGAGCGCGT GGTCCTGGTC GGCGTCTGGA CCGACGGCAC CGCCGCCGAC
GCCGAGGTGT CGCTGCGTGA ACTGGCAGCC CTGGCCGAGA CCGCGGGCTC GGAGGTGCTG
GACGGGGTGA TCCAGCGCCG CGAGAAGCCG GACCCGGCCA CCTACATCGG CAGCGGCAAG
GCCCTGGAGC TGCGCGACAT CGTGGTGGCC ACCGGCGCCG ACACGGTGAT CTGCGACGGA
GAACTGAGCC CCGGCCAGCT GATCCACCTG GAAGACGTGG TCAAGGTCAA GGTCATCGAC
CGCACGGCCC TGATCCTGGA CATCTTCGCC CAGCACGCCA AGTCCCGAGA GGGCAAGGCC
CAGGTCGCCC TCGCGCAGAT GCAGTACATG CTGCCCAGGC TCCGAGGCTG GGGTCAGTCC
CTGTCCCGCC AGATGGGTGG TGGCCGAGGC GGCCTGGCGA CCCGCGGACC CGGCGAAACC
AAGATCGAAA CCGACCGCCG CCGCATCCGC GAACGCATGG CCAAGCTCCG CCGCGAAATC
AACGACATGA GCAAGGGACG CGTGACCAAG CGCGCCGAAA GGCGCCGAGG CTCAGTCCCC
TCAGTAGTCC TCGCCGGCTA CACCAACGCC GGCAAGTCCT CCATCCTCAA CCGCCTCACC
GGCGCCGGAG TCCTCGTGGA GAACGCCCTG TTCGCCACCC TGGACCCCAC CGTCCGCCGC
ACAGAAACAG CATCCGGCCG CGCCTACACC CTCTCCGACA CCGTCGGCTT CGTCCGCCAC
CTCCCGCACC AACTGGTCGA GGCCTTCCGC TCGACCCTCG AAGAGGTAGG CGAAAGCGAC
CTGGTCCTGC ACGTCGTAGA CGCCAGCGAC GAAGACCCCG AAGGCCAGAT CTCCGCGGTC
CGAGCCGTCT TCGCCGACAT GGGCGCCGGC GACGTCAAAG AACTCATGGT CCTCAACAAA
GCGGACCTGG CAGACCCCGA AGTCCTGGCC CGCCTCCTCC GCCACGAACC CCACAGCATC
ATCGTCTCCG CCCGCACCGG CGAAGGCATC GACCACCTCC TCTCCGCCAT CGAACGCGAC
CTCCCCCGCC CCGGCGTAGA ACTAGAAGCC CTAGTCCCCT ACGACCGAGG CGACCTGGTA
GCCCGCATCC ACGCCGAAGG CGAAATGCTC AAAGAAGAAC ACACCGACCA CGGCACCCTA
GTCCGCGCCC TGATCCACCA GAACCTCGCC GCGCAACTGG AGCCCTTCCG AACAGTGGGC
GCGGTTTAG
|
|---|
| Protein sequence | MTESHKDAAR DEVYALNDHD TPEAEWDTED AFDAPAPLYR NRWADSRHDG EQFDLEERAS
LRRVAGLSTE LEDVTEVEYR QLRLERVVLV GVWTDGTAAD AEVSLRELAA LAETAGSEVL
DGVIQRREKP DPATYIGSGK ALELRDIVVA TGADTVICDG ELSPGQLIHL EDVVKVKVID
RTALILDIFA QHAKSREGKA QVALAQMQYM LPRLRGWGQS LSRQMGGGRG GLATRGPGET
KIETDRRRIR ERMAKLRREI NDMSKGRVTK RAERRRGSVP SVVLAGYTNA GKSSILNRLT
GAGVLVENAL FATLDPTVRR TETASGRAYT LSDTVGFVRH LPHQLVEAFR STLEEVGESD
LVLHVVDASD EDPEGQISAV RAVFADMGAG DVKELMVLNK ADLADPEVLA RLLRHEPHSI
IVSARTGEGI DHLLSAIERD LPRPGVELEA LVPYDRGDLV ARIHAEGEML KEEHTDHGTL
VRALIHQNLA AQLEPFRTVG AV
|
|---|
| |