Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_6754 |
Symbol | |
ID | 8338118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 7792938 |
End bp | 7794209 |
Gene Length | 1272 bp |
Protein Length | 423 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644959847 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_003117440 |
Protein GI | 256395876 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00057855 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACAGCA TCTCTGTGCG GGATCAAATC TGGCCGGCGC ACGCGGCGTG GGCCGACGGC GAGCTCACGG TCGCCGGACA CGGCGTGCGC GCGCTCGCCG CCGAGTTCGG CACGCCGCTC TACGTGCTCG ACGCCGCCGA CTTCCGAGCG CGCTGCTCGG CGTGGCTGGA CGCATTCCCG AACGGAGACG TGCACTACGG CGGCAAGGCG TTCCTGGCGC CGGCGGTGGT GGGGTGGTTG GCGGAGCTGG GACTGTGCCT GGATGTGTGC AGCGGCGGGG AATTGGCGGT GGCGCGCGTC GGCGGGATGC CGCCGGAGCG CGTGGTGTTC CACGGCAACA ACAAGTCGGT GGCGGAGATC CGGCAGGCGG TGGCGTGGGG CGTCGGCTGC ATCGTGCTGG ACTCGCTGCA CGAGGTCGAG CGCGTGGCGC GGGCAGCCGC AGAGGCGGGC ACGCGACAGC CGGTCATGGT GCGGGTGAAG CCCGGAATCG ATGCCGCCAC CCACGCTTCG TTGGCGACCG GTGGCGAGCG CACCAAGTTC GGGATGTCGA TGGCCTCCGG CGAGGCGATG GAGGCGGTGC GCCGGGTACT GGGGGAATCA GCACTCGAAT TCATCGGGCT GCACTCGCAC ATCGGCTCGC AGATCTTCGA CCTGGACTCG TTCGCCGAAG CCGCGCGCCG CATGGTCGGC TTCCTGCGCG ACGTCGAGCG CCGGCAGGGG ATCGTCGTCG GCCGCCTGGA TCTCGGCGGC GGCCTCGGTA TCCCTTATCT GCCCGGGGAA AAGCCCGCCT CGACTCCGGC GGATCTCGCC GACGTCCTGC ACGCGGTGGT CCCTGCCGGC ATCCGTCTCG CCGTCGAACC CGGTCGCGCC ATCGCCGGCC CGAGCACCGT CGCGGTCTAC GAGGTCGGCA CAGTGAAGGG CGGCTTCGTC GCGGTGGACG GCGGCATGAG CGACAACCCG CGCCCGGCGA CCTACGGCGC CGTGTACACC GCGGTCCTCG CCTCGCGGCA CAGCGCGGCG CCGGTCGAGC CGGTGACGGT CGTGGGCAAG CACTGCGAGA GCGGCGACGT GCTCATCGAG GACATCGCGC TGCCGGCGGA CCTGGCGCCC GGCGATCTGA TCGCGATCCC GTGCTCCGGC GCCTATCAGC GTTCCACTGC CAGCAACTAC AACCTGGTGA CGCGGCCGCC GGTGGTCGCG GTGCACGAGA ACGCGGCGCA CGCCATTGTG CGCCGCGAGA CTGAGGAGGA TCTGCTGCGG CTCTATCCCT GA
|
Protein sequence | MNSISVRDQI WPAHAAWADG ELTVAGHGVR ALAAEFGTPL YVLDAADFRA RCSAWLDAFP NGDVHYGGKA FLAPAVVGWL AELGLCLDVC SGGELAVARV GGMPPERVVF HGNNKSVAEI RQAVAWGVGC IVLDSLHEVE RVARAAAEAG TRQPVMVRVK PGIDAATHAS LATGGERTKF GMSMASGEAM EAVRRVLGES ALEFIGLHSH IGSQIFDLDS FAEAARRMVG FLRDVERRQG IVVGRLDLGG GLGIPYLPGE KPASTPADLA DVLHAVVPAG IRLAVEPGRA IAGPSTVAVY EVGTVKGGFV AVDGGMSDNP RPATYGAVYT AVLASRHSAA PVEPVTVVGK HCESGDVLIE DIALPADLAP GDLIAIPCSG AYQRSTASNY NLVTRPPVVA VHENAAHAIV RRETEEDLLR LYP
|
| |