Gene Caci_6732 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6732 
Symbol 
ID8338096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7764757 
End bp7766034 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content68% 
IMG OID644959826 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003117419 
Protein GI256395855 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.255639 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTCAG TTCGCACCAG GCGGATCGTC GCTGTCGCCG GTGCCGCGGC GGTGCTGGTG 
ACCGCCGCGG CGTGTGGCAG CAGCGGTCCC AGCAAGAGCA CCGGGTCCTC TTCCTCCGGC
GGCGGAACCG GCGGCGCCAC CTCGGGCGTC ACCCTGCAGG TGCTGATCGG GTCCTCCGGC
GACGCCGAGA CCAACGCGGT GGTCGCCGCG GGCAACGCCT GGGCCGCCAA GACCGGCAAC
AAGGTCGTCG TCACCCCGGC CAAGGACCTC ACCCAGCAGC TCACGCAGTC GCTGGCCGGC
GGGACCCCGC CGGACATCTT CTACGTCGAC GCCTCCAAGT TCCAGAGCCT GGTCAAGGGC
AACGCCCTGG CCGACGTCGG ATCGAAGATC ACTGATTCGG CCGACATGTA CCCGAACCTG
CAGCAGGCGT TCACCGCCAA CGGGCAGTAC TACTGCGTCC CGAAGGACTT CTCCACGCTC
GCGCTGGAGA TCAACAGCGA CCTGTGGACG AAGGCCGGTC TGACCGACGC CGACGTCCCG
ACGACCTGGG ACCAGCTGGA GACCGTCGCC AAGAAGCTGA CCGGCAACGG CGTCACCGGC
CTGGTCATGA GCGACACCCT GGACCGCATC GGCGCCTTCA TGCGCCAGGC GGGCGGCTCG
GTGGTCTCCA CCGACGGCAA GACGGTCACC GCCGACTCCC CGCAGAACCT CGCCGCGCTG
CAGTACCTGC AGAAGCTGGG CAAGGAGGGC GCTCTGAAGT TCCCCAAGCA GGTCGACGCC
GGCTGGGGCG GCGAGGCGCT GGGCAAGGGC AAGGCGGCGA TGACGATCGA GGGCAACTGG
ATCGTCGGCT CGATGCAGAA GGACTACCCG AACGTCCACT ACAAGGTCGT CCCGCTGCCG
GCAGGCCCGG CGGGCAAGGC GACGCTGTCC TTCACCAACT GCTGGGGCGT GGCGCAGAAG
AGCTCGCACC AGGCCGCCGC GGTCGACTTC ATCGACTACC TGACGACCGT CGACCAGCAG
ATGAGCTTCG CCAAGGCCTT CGGCGTCATG CCCTCGCGGC AGGCCGCCAA GAGCCAGTTC
ACGACCGCCT TCCCGGACCA GGCGGCGTTC GTCACCGGGG CGGACAACGC CTTCGGACCG
GTCGGCTTCC CCGGCTTCGA CGCCGTGCAG AAGGACTTCG ACTCCAAGAT CCAGGGCTTG
TCGGACGGCT CCTCGGACCC GAAGAGCATG TTGTCCAGCC TCCAGAAGAA CGCCTCTGAC
GCGCTGAGCA ACAACTAG
 
Protein sequence
MKSVRTRRIV AVAGAAAVLV TAAACGSSGP SKSTGSSSSG GGTGGATSGV TLQVLIGSSG 
DAETNAVVAA GNAWAAKTGN KVVVTPAKDL TQQLTQSLAG GTPPDIFYVD ASKFQSLVKG
NALADVGSKI TDSADMYPNL QQAFTANGQY YCVPKDFSTL ALEINSDLWT KAGLTDADVP
TTWDQLETVA KKLTGNGVTG LVMSDTLDRI GAFMRQAGGS VVSTDGKTVT ADSPQNLAAL
QYLQKLGKEG ALKFPKQVDA GWGGEALGKG KAAMTIEGNW IVGSMQKDYP NVHYKVVPLP
AGPAGKATLS FTNCWGVAQK SSHQAAAVDF IDYLTTVDQQ MSFAKAFGVM PSRQAAKSQF
TTAFPDQAAF VTGADNAFGP VGFPGFDAVQ KDFDSKIQGL SDGSSDPKSM LSSLQKNASD
ALSNN