Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_6667 |
Symbol | |
ID | 8338031 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 7682354 |
End bp | 7683217 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644959761 |
Product | squalene synthase HpnD |
Protein accession | YP_003117354 |
Protein GI | 256395790 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.349811 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCCCC AAGCCGCCTA CGAGCACTGC GAACGGGTGG TCCGCTCCCG GGCCCGGAAC TTCGCGTACG GCATCCGCCT GCTGCCGACG ACCAAACGCC AGGCGCTGTC CGCGGTGTAC GCCTTCGCGC GCCGCGTCGA CGACATCGGC GACGGCTCGG AGACCCGCGG CGAGCGCCTG ACCCAGCTGG CCGCCGCCCG CGAGGAGCTG CACCGCATCG ACGAGCATCC GGAGGACCCG GTCCTGGTCG CGCTCGCCGA CGCCGCGCGC CAGCACCCGA TCCCGCTGGC CGCCTTCGAC GAGCTCATCG ACGGCTGTGA GGCCGACGTC CGCGGAACCG ACTACGCCAC CGCCGACCAG CTGACCTTCT ACTGCCGCTG CGTCGCCGGG TCCATCGGCC GGCTCTCCCT CGGCGTCTAC GGCGTCGACC CCGCGCGCCA GAAGGAAGCC TCCGGCTACG CCGACTCCCT CGGGGTCGCG CTCCAGCTCA CCAACATCCT GCGCGACATC CGCGAGGACG GCCTGATGGG CCGCGTCTAC CTCCCGGCCG ACGAGCTGGT CCGGCACGGC TGCACGCTCA AGATCGACGA GCACGGCCGC TTCGTCGACG ACGACGCCGA CCTCGCCGCC CTGGTCCGCG ACCAGGCGGC GCGCGCCCGA GCCTGGTACG ACGAAGGCCT GCGCCTGCTG CCGCTGCTGG ACCGCCGCAG CGCCGCCTGC ACCGCGGCGA TGGCCGGCAT CTACCGCCGG CTGCTGATCC GCATCGCCGA GCAGCCGATC AGCGCCCTGA ACGCCCGGAT GTCGCTGCCG GCCTGGGAGA AGGGCGTGGT CGCGGCCCGC GCGCTGGCCG GGGTGACGCC GTGA
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Protein sequence | MDPQAAYEHC ERVVRSRARN FAYGIRLLPT TKRQALSAVY AFARRVDDIG DGSETRGERL TQLAAAREEL HRIDEHPEDP VLVALADAAR QHPIPLAAFD ELIDGCEADV RGTDYATADQ LTFYCRCVAG SIGRLSLGVY GVDPARQKEA SGYADSLGVA LQLTNILRDI REDGLMGRVY LPADELVRHG CTLKIDEHGR FVDDDADLAA LVRDQAARAR AWYDEGLRLL PLLDRRSAAC TAAMAGIYRR LLIRIAEQPI SALNARMSLP AWEKGVVAAR ALAGVTP
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