Gene Caci_6096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6096 
Symbol 
ID8337459 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp7016437 
End bp7017762 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content75% 
IMG OID644959198 
Productprotein of unknown function DUF901 
Protein accessionYP_003116792 
Protein GI256395228 
COG category[R] General function prediction only 
COG ID[COG3688] Predicted RNA-binding protein containing a PIN domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0632781 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCTCAC CAGAGGGCGA ACGTCTCACC ATCACACTGC CGGACTCGGT GCGCCAGCGC 
GTCGTGGAGA TCGCCTCCGA GGCGCTGGGC AAGATGCCGG CCGCGGAGAT CCCCGCGCCC
TTGCGGCCCT TCGCCAAGTT CACTCCAGCC AAGCGGGCCA AAGCCGCGGC GATCCCCATG
GCGGCGTCCT TGGAGAGCGA CGGAGCATTT CGTACGCGGG TCGCCGAACG TGTGCGCGAA
GCATCCCCTG ACCTGTCCGA CTCCCTGTTC GCCGGGGTGG TACCGGCCGC CGCTGACCCG
CACGAGGTCG CGGCGGTCGC TTATGTGCTG CGTCCGCACG GCTGGACCGG GATAGTCAAG
GACGCCCTGG AGGCGGTGAC GCAGGGCGCG CGCCTGGCCG CCGGCGAGGC CGCCGAGAGC
GAGGTCGCCC GGCTCGCCGC GGAGGTCGCG GAGCTGCGCG AGACGGCACG CGTCGCCGCC
GACAGCCTGC GGGTCGCGCA GGAGGAGGCG CGCCGCGAGG GCGACCAGTT GCGGCGCAAG
GTGCGGCAGC TGGAAGCGGA CATGCGGCGG GCCCAGGCCG CGGCGCGGGC GGCGGAGACG
GCGCTGGAGA CGGAGCGGAC GTCGGCGGCC TCGGCCGCGT CGGCCTCAGA GGCCGAATTA
AGGCGGCTGC GGACGCGCCT GACGGCCGCG GAGACCGCGC TGGACACCGC GCGCCGCTCG
GCGCGCTCCG GGCGCTCTGA GGGGGATATG CGGCTGCGGC TGCTGCTGGA CACCGTGACC
GGCGCGGTGA AGGGCTTGGA GCGCGAGCTG GCGCTGCCGC CGACCGAGAC CCGGCCGGCG
GACACGGTCG GGGCGGCGTC TCCGGACTCT GTCGCGCCCT CGGACATGTC GGTGCAGGGG
CGCGCCAAGG ACGATCCGGC GCTGCTGGAC CAGTACCTGG CGCTGCCGAT GGTGCACCTG
GTGGTCGACG GCTACAACGT CACCAAGTCC GGCTATCCGA CGCTGCCGCT GGCCGAGCAG
CGGGTGCGCC TGGTCGGCGG GCTGGCGGCG CTGGCCGCGC GCACCGGCGC GGAGGTGACG
TGCGTCTTCG ACGGCGCGGC GCTGGACGGC CCGGTGCGGC TGACGCAGCC GCGCGGGGTG
CGCGTGCTGT TCTCCGCGCC GGGGGAGATC GCCGACGAGC TGATCCGGCG GCTGGTGGCG
GCCGAGCCCG CCGGGCGGCC GGTGGTGGTG GTGTCCTCGG ACCGCGAGGT GGCCGAGGGC
GTGCGGCGGT CGGGGGCACG GCCGGTGCCG GCGTCGATGC TGCTGAACCG GATGGCGCGG
TCCTGA
 
Protein sequence
MSSPEGERLT ITLPDSVRQR VVEIASEALG KMPAAEIPAP LRPFAKFTPA KRAKAAAIPM 
AASLESDGAF RTRVAERVRE ASPDLSDSLF AGVVPAAADP HEVAAVAYVL RPHGWTGIVK
DALEAVTQGA RLAAGEAAES EVARLAAEVA ELRETARVAA DSLRVAQEEA RREGDQLRRK
VRQLEADMRR AQAAARAAET ALETERTSAA SAASASEAEL RRLRTRLTAA ETALDTARRS
ARSGRSEGDM RLRLLLDTVT GAVKGLEREL ALPPTETRPA DTVGAASPDS VAPSDMSVQG
RAKDDPALLD QYLALPMVHL VVDGYNVTKS GYPTLPLAEQ RVRLVGGLAA LAARTGAEVT
CVFDGAALDG PVRLTQPRGV RVLFSAPGEI ADELIRRLVA AEPAGRPVVV VSSDREVAEG
VRRSGARPVP ASMLLNRMAR S