Gene Caci_5990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5990 
Symbol 
ID8337353 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6911076 
End bp6913022 
Gene Length1947 bp 
Protein Length648 aa 
Translation table11 
GC content68% 
IMG OID644959095 
ProductCarbohydrate-binding CenC domain protein 
Protein accessionYP_003116689 
Protein GI256395125 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3469] Chitinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.793128 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.422272 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCAGTG CAAGAACGCG CCTCCGCGCG TTCGCGGCCC TGTTGGCCGC AACCCTGATA 
GCCGCCACGA TGACCATCGC CCTGAGCGCC TCCCGCGCCC GCGCCGACAG CAACCTGGTG
GTGAACTCCG GCTTCGAGAC CGGAAGCCTG AGCCCGTGGA CGTGTGACGG CAGCACCGGA
AGCGTGGTGT CCTCCCCGGT CCACAGCGGC AGCCACGCGC TGGCCGGAGC CGCGAACAAC
TCCGACGACG CGCAGTGCAC GCAGACGGTG TCCGTGCAGC CGAATTCGGC GTACACGCTC
TCGGCGTACG TCGAGGGCGG CTACGTCTAC ATCGGCGCCA CCGGCTACAG CTCCACGTGG
ACGCCGTCGG CGACCTCCTT CCAGCAGCTG TCCACCAGCT TCACCACCGG CGCCTCGACC
ACGAGCGTCC AGATCTACCT GCACGGCTGG TACGGGCAGG GCACGTACTT CGCCGACGAC
GTCTCGCTTG TCGGACCGGG TGGCCAGACT CAGGTGCCCC CCGTTCCCAG CGGTCTGTCG
GTCAGCGGGA CGACGTCGAG CTCGGTGTCG CTGGCGTGGA ACGCCTCGAC CGGAGCCACC
GGCTACAACG TCTACCGTGG CGGCGCCAAG ATCGCGAGCG TGACCGGTAC TTCGTACACG
AACACCGGTC TGAGCCCGTC CACCAGTTAC AGCTACACCG TCACCGCGAC GAACTCTGCA
GGGGAGTCGG CGCAGTCCGG AGCTGTCACC GGTACCACCA CCGCCGGCGG GACTCAGGTT
CCGCCGACGC CCAGCGGTCT GTCGGTCAGC GGGACGACGT CGAGCTCGGT GTCGCTGGCG
TGGAACGCCT CCAGCGGAGC CACCGGCTAC AACGTCTATC GCGGCGGTTC GAAGATCGCG
AGCGTGACCG GTACTTCGTA CACGAACACC GGTCTGAGCG CCTCCACCAC CTACAGCTAC
ACGGTCTCGG CGACCAACTC GGCCGGCGAG TCCGGGCAGT CCTCCGCGGT GAGCGCCACG
ACCGCCGGAA CCGGCGGCGG GAACGGCTCG CTGCCCAAGC ACGTGCTGAC CGGCTACTGG
CAGGACTTCG TGAACAGCGC CAAGCCGCTG AGCCTGGCGG CCGTGCCCGC CGGCTACAAC
CTCGTCGCCG TGGCCTTCGC CAACGCCGAC CCGAGCCACC CCGGCGGCGT GACGTTCAGC
GTCGACTCCG GGCTGTCCTC GGCGCTCGGC GGCTACACCG ACGCACAGTT CAAGGCGGAC
ATCGCCACGC TGCACTCGCG CGGCCAGAAG GTGATCGTCT CCGTCGGCGG GCAGAACGGC
GCGATCAGCG TCGGCGACTC CACGTCGGCG AACAACTTCG CCACCAGCGT CTACAGCATC
ATGCAGAGCT ACGGCTTCGA CGGCGTGGAC ATCGACCTGG AGAACGGCGT CAACGCCACG
TACATGGCGC AGGCGCTGCA GTCGCTGTCC GGAAAGGCCG GCTCGGGGCT GATCATCACC
ATGGCTCCGC AGACGATCGA CATGCAGTCG ACCGGCATGG CGTACTTCCA GCTGGCGCTG
AACATCAAGA ACATCCTCAC GATCTCCAAC ATGCAGTACT ACAACTCCGG GTCGATGAAC
GGCTGCGACC AGGGTGTGTA CTCCGAGGGG ACCGAGAACT TCATGACCGC CCTGGCCTGC
ATCCAGCTGC AGGGCGGGCT GCGTCCGGAC CAGGTCGGGC TCGGACTGCC GGCCTCCGGC
AGCGCGGCCG GCGGCGGCTA CGTCTCGCCC TCGCTGGTGA ACAACGCGCT GGACTGCCTG
GCGGCCAAGA CGAGCTGCGG CTCGTTCGTC CCGCCGAGCA CCTGGCCGGC CATCCGCGGC
GCGATGACCT GGTCGATCAA CTGGGACGCG AGCAACGGAT ACAGCTTCGT GAACACCGTT
GCTCCGCACC TCGCGGCGAT GCCGTGA
 
Protein sequence
MTSARTRLRA FAALLAATLI AATMTIALSA SRARADSNLV VNSGFETGSL SPWTCDGSTG 
SVVSSPVHSG SHALAGAANN SDDAQCTQTV SVQPNSAYTL SAYVEGGYVY IGATGYSSTW
TPSATSFQQL STSFTTGAST TSVQIYLHGW YGQGTYFADD VSLVGPGGQT QVPPVPSGLS
VSGTTSSSVS LAWNASTGAT GYNVYRGGAK IASVTGTSYT NTGLSPSTSY SYTVTATNSA
GESAQSGAVT GTTTAGGTQV PPTPSGLSVS GTTSSSVSLA WNASSGATGY NVYRGGSKIA
SVTGTSYTNT GLSASTTYSY TVSATNSAGE SGQSSAVSAT TAGTGGGNGS LPKHVLTGYW
QDFVNSAKPL SLAAVPAGYN LVAVAFANAD PSHPGGVTFS VDSGLSSALG GYTDAQFKAD
IATLHSRGQK VIVSVGGQNG AISVGDSTSA NNFATSVYSI MQSYGFDGVD IDLENGVNAT
YMAQALQSLS GKAGSGLIIT MAPQTIDMQS TGMAYFQLAL NIKNILTISN MQYYNSGSMN
GCDQGVYSEG TENFMTALAC IQLQGGLRPD QVGLGLPASG SAAGGGYVSP SLVNNALDCL
AAKTSCGSFV PPSTWPAIRG AMTWSINWDA SNGYSFVNTV APHLAAMP