| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5831 |
|---|
| Symbol | |
|---|
| ID | 8337192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 6734839 |
|---|
| End bp | 6736740 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644958935 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003116530 |
|---|
| Protein GI | 256394966 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTACCC GGGCCGCCCC GGCCGCGCTG GCGCTGAGTT GGCGCGCGGC GCCGCTGGCC
TCGGTGGCGT CGCTGGCCGT CACGCTCGCC CTCGGGGTGC TGCCGGCCAC GACCGCCTGG
ACCAGCAAGC TCCTGCTGGA CGAGCTGGCC CGGGGGCACA CGGTGCGCGT CGGCCGTGCG
TCCTGGCTGG TCGCCGCCGG AGCCGCCCTC GCCGCGGCGA TGACGATCCT GACGCTTGTC
AGTACTCAGC TATCCCGGCG CGTCCAACGC GCCATCACGT TGCGCACGCA GGACCAGCTC
TACGAGCGGG TCAACGCCAT CGCCGGTCTG CGCTCCTTCG AGGACCCGGT CTTCCAGGAC
CGGCTGCGCC TTGCCGAGCA GGGAGCGCAA GGCGCGCCGG GCGCGATCAC CAAGCTGCTG
ACCGAGACCG TCCGCAACGC CATCGTCATC CTGGGGTATC TGGGAACCCT GATGGTGCTG
TGGCCGCCGA TGGCCGGCTT TCTGGCGCTC GCGGCGGTCC CGGCCTTCCT CGCGCAGCGC
GAGCTGGCCC GGCGGCGCGC CGGGACGACC GAGAAGATGA TGGAGACGGC GCGCAAACGG
TACTTCTACC AGGCGTTGCT GACCGACGCC GCCTCGGCGA AAGAGGTCCG GCTGTTCGGG
CTCGGCGGGT TCTTCCACGG CCGGCTGCTG GCGATGCTGC GCGCCACGAC GGACGCGGAT
CTGGCGGTCG AGGCGTATGC GGCCCGGGTC CAGGGTCTGC TGGGCTTGCT CACGGCAGCG
GTCGCGGCTG TCGCCGGGAT CGTCGTGGTC CACGGGATCG CCGACGGCCG CGTCTCCCTC
GGCGGGTTCA TGCTGTTCAC GGTGGCGGTC GGCGGGGTGC AGAGCGCGGT GTCGGCGATC
ACCACGCAGG CTTCGACCAG CGGACAGTAC CTGCGCTTGT TCCGCAGCTG GCGCGACCTC
GTCGACGCCC CGGCGGACCT GCCGTCCGGG ACGACTCCGG CTCCGGCGCT GCGGCACGGC
GTCGAACTGC GCGACGTCTG GTTCCGCTAC CAGGACGACG GACCGTGGGT CCTGCGGGGA
GTCAACCTTC TGATTCCCGC CGGTCAGGCG GTCGGACTGG TCGGTCTCAA CGGCGCGGGC
AAGAGCACGC TGGTGAAGCT GTTGTGCCGC TTCTACGCCC CCGAGCGCGG CCAGATCCTG
TGGGACGGCG TGGACGTCGC AGAGTTCGAC ATCGCCTCGC TGCGCCGCCG GATCGGCGCC
ACGTTCCAAG ACTTCTGCCG CTACGACGCC ACCGCGGCGG AGAACGTCGG TCTCGGCGAC
CTGGACCGGA TCGGAGACCT GGCGGCGATC CGGCAGGCGG CCGCGGACGC CGGGATCGAC
GCCAAGCTCG CCGGGTTGCG CGACGGCTAC GCCACCTTCC TGTCGCGCGT GTTCCGCGAC
GCGGAGTTGA AGGCCGGCAC CGCGCTCTCC GGCGGCCAGT GGCAGCGGGT CGCCATCGCC
CGCTCGCTGA TGCGCCGGGA CGCGGACCTG CTGATCCTCG ACGAACCCGG CTCCGGCCTG
GATCCGGAGG CCGAGCACGA GGTGCACCTG GCGCTGAGCC GGCATCGCGC GGGGCGTACC
AGCCTGCTGA TCTCGCACCG CCTCAGCACG CTGCGAGACG CCGACCTCAT CGTCGTGCTG
CGCGAGGGAC GCGTGGTCGA GCAGGGCGGC CATACCGAGC TGATGGCGGC GCAGACCGAC
TACGCGCGGC TGTTCCTCAC TCAGGCCGCC GGATACCGCG ACACGCCGGA GCCGGTGTCA
GCGCCATCGC CATCGCCGAC ATCCGAGCCG CCGTCCGAGC CGAGATCCGA GCCGACGCCG
GATCCGGAGC CGTTCCATGC GGCGATCGGT TCGGCGTCAT GA
|
|---|
| Protein sequence | MSTRAAPAAL ALSWRAAPLA SVASLAVTLA LGVLPATTAW TSKLLLDELA RGHTVRVGRA
SWLVAAGAAL AAAMTILTLV STQLSRRVQR AITLRTQDQL YERVNAIAGL RSFEDPVFQD
RLRLAEQGAQ GAPGAITKLL TETVRNAIVI LGYLGTLMVL WPPMAGFLAL AAVPAFLAQR
ELARRRAGTT EKMMETARKR YFYQALLTDA ASAKEVRLFG LGGFFHGRLL AMLRATTDAD
LAVEAYAARV QGLLGLLTAA VAAVAGIVVV HGIADGRVSL GGFMLFTVAV GGVQSAVSAI
TTQASTSGQY LRLFRSWRDL VDAPADLPSG TTPAPALRHG VELRDVWFRY QDDGPWVLRG
VNLLIPAGQA VGLVGLNGAG KSTLVKLLCR FYAPERGQIL WDGVDVAEFD IASLRRRIGA
TFQDFCRYDA TAAENVGLGD LDRIGDLAAI RQAAADAGID AKLAGLRDGY ATFLSRVFRD
AELKAGTALS GGQWQRVAIA RSLMRRDADL LILDEPGSGL DPEAEHEVHL ALSRHRAGRT
SLLISHRLST LRDADLIVVL REGRVVEQGG HTELMAAQTD YARLFLTQAA GYRDTPEPVS
APSPSPTSEP PSEPRSEPTP DPEPFHAAIG SAS
|
|---|
| |