Gene Caci_5684 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5684 
Symbol 
ID8337044 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6557785 
End bp6559218 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content68% 
IMG OID644958787 
Productinner-membrane translocator 
Protein accessionYP_003116383 
Protein GI256394819 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4177] ABC-type branched-chain amino acid transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGACCT CGATCGCCGA GCTGTCGGCG CAGGTCCGGC AGCTGCGCCG GAACGACGCG 
TGGTGGAAGA ACCCGCGCTG GGGCCGGCTG CTCATCATCT TCGCCCTGTT CATGGTGCTC
AGTCTGCTGA CGAACCAGGT CCAGGGCTCC TCCAGCAACT ACACGCTGGT CTTCAGGAAC
AGCTGGTTCT CCGCGCGCGG CGCCCAGTTC CTGGTCGGCT CCGTGGTGGT CTGGGTGATC
GCCGAGGCCT GGCGCGCCCG GGGACTGACG CAGATCGCCT CCCAGGCGAC CGCTCCGGTC
CGGCGGGTCA GGAACATCGC CGCGCTGAAG AACATCTGGG TCAAGCGCGG CACGCTGCTG
GCCGTGGTGG TCATCGCGAT CATGCTGCCG ACGATGGGCC TGTTCACCCT GCCGTACTTC
CAGTCCGTGC TCTCCGACCA GGTCGGCGTG TACGTGCTGG CCGCGGTCGG GCTGAACGTG
GTGGTCGGCT GGGCCGGCCT GCTGGACCTG GGGTACATCG CGTTCTTCGC GATCGGCGCG
TACACCACCG CCATCTTGTC CGGCCGGCTG CCGATCGGCG CCGACGGCAA CCCCGAGGCA
CACCCGCCGA TCCACCTGAA CCTGTTCTTC GCCTTCCCGA TCGCGGTCCT GCTGACCATG
GCCGCCGGGC TCATCCTGGG CGCCCCGACG CTCCGGCTGC GCGGGGACTA CCTGGCGATC
GTCACGCTCG GCTTCCACGA GATCGTGCTG AACATCGCCC GGAACAACCC GAAGAACATC
ACCGGCGGCG CCCTCGGCGC GACCAGCATC CCGACGTTCC GGTTCAACCT GTTCGGCATC
CACTACGACT GGAACACCAG CGATTCCAAA CCGTACTGGT ATCTGGCGAT CGGGCTGATC
ATCGTCGTGG TCTTCGCCTT CCGGCGGCTG GAACACTCCA AGGTCGGCCG GACCTGGACC
GCGATCCGCG AGGACGAGGT GGCCGCGGCC GCCTCGGGCG TGCCGACGGT GAAGTACAAG
CTGATGGCCT TCGCGATCGG CGCCTCCACC TCCGGCTTCG CCGGCGTGCT GGCGACCGCG
AAGATCACCG CGATCACCCC GGACAACTTC CCGCTGCCGT TGTCCATCTA CATCCTGGCC
TACGTCATCT TCGGCGGCAT GGGCTCGCTG ACCGGCGTGA TCGTCGGCGC CTCGCTGATG
ACCTTCCTGC CGTACTTCCT GCAGGGCCCG CCCTCGTGGT TCAACGGCGG GCACCCGGTG
GTGGACCCCA AGGACATCCC GATGTGGGTC GGCGCGGTGC TGCTGGTCAT GATGATCTTC
CGGCCGCAGG GTCTGATCCC GTCCAAACGG CGGGCCCAGG AGCTGGCGCA GGCCGAGCAC
GGCGTCGGCG ACGCCGACGC GATGACCGAG ACGGCGGAAG GAGTGGCGCC GTGA
 
Protein sequence
MTTSIAELSA QVRQLRRNDA WWKNPRWGRL LIIFALFMVL SLLTNQVQGS SSNYTLVFRN 
SWFSARGAQF LVGSVVVWVI AEAWRARGLT QIASQATAPV RRVRNIAALK NIWVKRGTLL
AVVVIAIMLP TMGLFTLPYF QSVLSDQVGV YVLAAVGLNV VVGWAGLLDL GYIAFFAIGA
YTTAILSGRL PIGADGNPEA HPPIHLNLFF AFPIAVLLTM AAGLILGAPT LRLRGDYLAI
VTLGFHEIVL NIARNNPKNI TGGALGATSI PTFRFNLFGI HYDWNTSDSK PYWYLAIGLI
IVVVFAFRRL EHSKVGRTWT AIREDEVAAA ASGVPTVKYK LMAFAIGAST SGFAGVLATA
KITAITPDNF PLPLSIYILA YVIFGGMGSL TGVIVGASLM TFLPYFLQGP PSWFNGGHPV
VDPKDIPMWV GAVLLVMMIF RPQGLIPSKR RAQELAQAEH GVGDADAMTE TAEGVAP