| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5672 |
|---|
| Symbol | rpsA |
|---|
| ID | 8337032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 6542747 |
|---|
| End bp | 6544228 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644958776 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_003116372 |
|---|
| Protein GI | 256394808 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.457368 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGCA GCACCGAGAC CGCCCGAACG CCTCAGGTCG CCATCAACGA CATCGGTTCG
GCGGAGGAAT TCCTCGCCGC GATCGACCTG ACCATCAAGT ACTTCAACGA CGGCGACATC
GTCGAAGGTG TCATCGTCAA GGTCGACCGG GATGAAGTCC TGCTCGACAT CGGTTACAAG
ACCGAGGGTG TGATCCCGTC CAGGGAGCTC TCGATCAAGC ACGACGTCGA CCCCAACGAG
GTCGTCGCCG TGGGCGACCA CATCGAGGCC CTCGTCCTCC AGAAGGAGGA CAAGGAAGGC
CGCCTGATCC TGTCCAAGAA GCGCGCGCAG TACGAGCGCG CCTGGGGCAC GATCGAGGAG
ATCAAGGAGA AGGACGGCAT CGTCACCGGT ACCGTCATCG AGGTCGTCAA GGGTGGTCTC
ATCCTGGACA TCGGTCTCCG TGGCTTCCTG CCGGCCTCCC TGGTCGAGAT GCGCCGCGTG
CGCGACCTGC AGCCGTACGT CGGCAAGGAG CTCGAGGCCA AGATCATCGA GCTGGACAAG
AACCGCAACA ACGTGGTCCT GTCCCGCCGC GCCTGGCTCG AGCAGACCCA GTCCGAGGTC
CGCCAGAACT TCCTCACGAC CCTGCAGAAG GGTCAGGTCC GCTCCGGCGT CGTGTCCTCG
ATCGTCAACT TCGGCGCGTT CGTGGACCTC GGCGGCGTGG ACGGTCTGGT GCACGTCAGC
GAGCTGTCCT GGAAGCACAT CGACCACCCC TCCGAGGTCG TCGAGGTCGG CCAGGAGGTC
ACGGTCGAGG TCCTGGACGT CGACATGGAC CGCGAGCGCG TCTCGCTGTC CCTGAAGGCG
ACCATGGAGG ACCCGTGGCA GACCTTCGCC CGCACCCACG CCATCGGGCA GGTCGTGCCG
GGTAAGGTCA CCAAGCTGGT GCCGTTCGGC GCGTTCGTCC GGGTGGACGA GGGCATCGAG
GGCCTGGTCC ACATCTCCGA GCTGGCCGAG CGCCACGTGG AGGTCCCGGA GCAGGTCGTC
AACGTGGGCG ACGAGATCTT CGTCAAGGTC ATCGACATCG ACCTGGACCG CCGTCGCATC
TCGCTGTCGC TGAAGCAGGC CAACGAGGGC CTCACCGGCG ACATCGAGAC CGACCAGTTC
GACCCGGCGC TGTACGGCAT GGCCGCCACC TACGACGACC AGGGCAACTA CATCTACCCC
GAGGGCTTCG ACCCGGAGAC GGGCGAGTGG CTCGAGGGCT ACGACGCCCA GCGCGAGGTG
TGGGAGGGGC AGTACGCCGA GGCCCACACC CGCTACGAGT CGCACCAGAA GCAGATCGCC
GAGGCCCGCA AGGCCGACGC CGAAGCCGGT GTCCAGGAGA ACGCCGAGGG TGCGCCCTCG
TCCTACTCCT CGGGTGTCGT CGAGGAGACC ACCGGCGGTG CCCTGGCCTC CGACGAGGCC
CTGGCCGCGC TGCGCGAGAA GCTGTCGGGC GGCCAGAGCT GA
|
|---|
| Protein sequence | MTSSTETART PQVAINDIGS AEEFLAAIDL TIKYFNDGDI VEGVIVKVDR DEVLLDIGYK
TEGVIPSREL SIKHDVDPNE VVAVGDHIEA LVLQKEDKEG RLILSKKRAQ YERAWGTIEE
IKEKDGIVTG TVIEVVKGGL ILDIGLRGFL PASLVEMRRV RDLQPYVGKE LEAKIIELDK
NRNNVVLSRR AWLEQTQSEV RQNFLTTLQK GQVRSGVVSS IVNFGAFVDL GGVDGLVHVS
ELSWKHIDHP SEVVEVGQEV TVEVLDVDMD RERVSLSLKA TMEDPWQTFA RTHAIGQVVP
GKVTKLVPFG AFVRVDEGIE GLVHISELAE RHVEVPEQVV NVGDEIFVKV IDIDLDRRRI
SLSLKQANEG LTGDIETDQF DPALYGMAAT YDDQGNYIYP EGFDPETGEW LEGYDAQREV
WEGQYAEAHT RYESHQKQIA EARKADAEAG VQENAEGAPS SYSSGVVEET TGGALASDEA
LAALREKLSG GQS
|
|---|
| |