Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5600 |
Symbol | |
ID | 8336960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 6455451 |
End bp | 6457100 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644958704 |
Product | signal transduction histidine kinase regulating citrate/malate metabolism |
Protein accession | YP_003116300 |
Protein GI | 256394736 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3290] Signal transduction histidine kinase regulating citrate/malate metabolism |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0363476 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.371514 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACGCG GATCGGGACG ACGGCTCAGC AGCCAGATCT TCGTCAGCCA GGTGTCGATC CTGCTGGCGG TGGTGCTGGT GGGCTTCGGG CTGTTCGCCG TGCAGGAGCG GCGGCAGGTC GACCGGCAGT ACATGGACGA GGCGTTGCAG ATCGCGCAGA CCGTGGCCGA CACCCCGGAG GTCAAGAGCT GCATCGCGTT CCCGTCGATC TCCTGCGACG GGACGCTGCA GAGCATCGCC GCGCGGCTCC AGCGCGACAC CCGGACCGAC TACGTGGTCA TCGTCGACGA GCACCGGATC CGCCACACCC ACCCCAAGGC CGCGCTGATC GGCCGGCCGA TCGAGGAACC CCTGGTCACC AAGCCCGACG TGCGCTTCGA CCCGGGCAGC GTCGGGGAGT CGGTGAACGG CCGGGTCCCG CTGTACAGCC CGCTCGGCGA CCAGATCGGC GAGGTCTCGG TCGGCCGCCG CGTCGCCTCG GTCACCTCGG TCTTCATCGG CCAGCTCCCG GTGTACGCGG CCTGGTTCGG CGCCGCGCTC GCGGTCGGCG CGCTGGCCTC CTACGTGCTG GCCCGCCGCC TGAAGAAGCG CACCTTCGGC CTGGAACTCG ACGAGATCGC CAAGCTGCTG CAGGAGCGCG AGGCGGTGCT GCACGGCATC CGCGAGGGCA TGATCGCCTT CGACCGCGCC GGCCGGGTCA CCATGGTCAA CGACGAGGCG CGGCGGCTGC TGGGCCTGCC GATGTTCGGC GGCGTCGGCG GCCACCTGGC GGACGTGGTC CCCGCCGGGC GGCTGCGGGA CCTGCTCTCC GGCGAGATCG AGGGCAAGGA CCAGGTGGTG CTGACCGACG AGTACTGCTT GACGGTGAAC CGCATGCCGG TGACGCTGGC CGGCAAGCCG CACGGCGCGG TGGTGACCCT GCGGGACCGC ACCGAGCTGT CCGGACTGCT GCGCGAGTTG GACAGCGTCA CCAGCCTCAC CGACGCGCTG CGGGCCCAGC AGCACGAGTT CTCCAACCGC ATGCACACCG TCGCCGGCCT GCTGGAGCTG GGGGAGCCGG AGGAGGCGCT GCAATACCTC ACCGACCTGT CCGGCGCCGA GGCGGAGTTC GCCGACTCGG TGCGCGCGCG GATCGCCCCC TCGGTACTGG TCGGGCTGAT CCTGGCCAAG GCCGCGGTCG CCGGCGAGCG CGGCGTGGAG CTGGAGCTGA CCGAGGACAC CTGGCTCGGC GACACCCCGG ACAAGGTGCA GGCGCTGACC ACGGTCCTGG GCAACCTGAT CGACAACGCC TTCGACGCGG TGTCCGGACC CGGCGTCGAT CCGGGCAAGC CCGGCCGGGT CCTGGTCGCG ATCGTCGAGG ACGACGACGG GATCACCGTC CGCGTCGCCG ACAACGGACC CGGCATCCCC GCCGGCGCCG CCGAGCACGT CTTCACCGAC GGCTTCACCA CCAAGCCGGC CACGGGATCG ATGCGAAGAG GTCTCGGTCT GGCCCTGGTC CACCGGCTGG TGCAGCGCCT CGGCGGTACC ATCGCCGCGA CCGAGGGCCC CGGCGCGGTG TTCACCGTCC GGCTGCCCGA CCAGCGCCCC GAAACCGCCG CGGAGCGCGC GGCGCTGCTG AGCACCGGAG GAGGCACCAG ACCCCGATGA
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Protein sequence | MRRGSGRRLS SQIFVSQVSI LLAVVLVGFG LFAVQERRQV DRQYMDEALQ IAQTVADTPE VKSCIAFPSI SCDGTLQSIA ARLQRDTRTD YVVIVDEHRI RHTHPKAALI GRPIEEPLVT KPDVRFDPGS VGESVNGRVP LYSPLGDQIG EVSVGRRVAS VTSVFIGQLP VYAAWFGAAL AVGALASYVL ARRLKKRTFG LELDEIAKLL QEREAVLHGI REGMIAFDRA GRVTMVNDEA RRLLGLPMFG GVGGHLADVV PAGRLRDLLS GEIEGKDQVV LTDEYCLTVN RMPVTLAGKP HGAVVTLRDR TELSGLLREL DSVTSLTDAL RAQQHEFSNR MHTVAGLLEL GEPEEALQYL TDLSGAEAEF ADSVRARIAP SVLVGLILAK AAVAGERGVE LELTEDTWLG DTPDKVQALT TVLGNLIDNA FDAVSGPGVD PGKPGRVLVA IVEDDDGITV RVADNGPGIP AGAAEHVFTD GFTTKPATGS MRRGLGLALV HRLVQRLGGT IAATEGPGAV FTVRLPDQRP ETAAERAALL STGGGTRPR
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