Gene Caci_5600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5600 
Symbol 
ID8336960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6455451 
End bp6457100 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content72% 
IMG OID644958704 
Productsignal transduction histidine kinase regulating citrate/malate metabolism 
Protein accessionYP_003116300 
Protein GI256394736 
COG category[T] Signal transduction mechanisms 
COG ID[COG3290] Signal transduction histidine kinase regulating citrate/malate metabolism 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0363476 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.371514 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACGCG GATCGGGACG ACGGCTCAGC AGCCAGATCT TCGTCAGCCA GGTGTCGATC 
CTGCTGGCGG TGGTGCTGGT GGGCTTCGGG CTGTTCGCCG TGCAGGAGCG GCGGCAGGTC
GACCGGCAGT ACATGGACGA GGCGTTGCAG ATCGCGCAGA CCGTGGCCGA CACCCCGGAG
GTCAAGAGCT GCATCGCGTT CCCGTCGATC TCCTGCGACG GGACGCTGCA GAGCATCGCC
GCGCGGCTCC AGCGCGACAC CCGGACCGAC TACGTGGTCA TCGTCGACGA GCACCGGATC
CGCCACACCC ACCCCAAGGC CGCGCTGATC GGCCGGCCGA TCGAGGAACC CCTGGTCACC
AAGCCCGACG TGCGCTTCGA CCCGGGCAGC GTCGGGGAGT CGGTGAACGG CCGGGTCCCG
CTGTACAGCC CGCTCGGCGA CCAGATCGGC GAGGTCTCGG TCGGCCGCCG CGTCGCCTCG
GTCACCTCGG TCTTCATCGG CCAGCTCCCG GTGTACGCGG CCTGGTTCGG CGCCGCGCTC
GCGGTCGGCG CGCTGGCCTC CTACGTGCTG GCCCGCCGCC TGAAGAAGCG CACCTTCGGC
CTGGAACTCG ACGAGATCGC CAAGCTGCTG CAGGAGCGCG AGGCGGTGCT GCACGGCATC
CGCGAGGGCA TGATCGCCTT CGACCGCGCC GGCCGGGTCA CCATGGTCAA CGACGAGGCG
CGGCGGCTGC TGGGCCTGCC GATGTTCGGC GGCGTCGGCG GCCACCTGGC GGACGTGGTC
CCCGCCGGGC GGCTGCGGGA CCTGCTCTCC GGCGAGATCG AGGGCAAGGA CCAGGTGGTG
CTGACCGACG AGTACTGCTT GACGGTGAAC CGCATGCCGG TGACGCTGGC CGGCAAGCCG
CACGGCGCGG TGGTGACCCT GCGGGACCGC ACCGAGCTGT CCGGACTGCT GCGCGAGTTG
GACAGCGTCA CCAGCCTCAC CGACGCGCTG CGGGCCCAGC AGCACGAGTT CTCCAACCGC
ATGCACACCG TCGCCGGCCT GCTGGAGCTG GGGGAGCCGG AGGAGGCGCT GCAATACCTC
ACCGACCTGT CCGGCGCCGA GGCGGAGTTC GCCGACTCGG TGCGCGCGCG GATCGCCCCC
TCGGTACTGG TCGGGCTGAT CCTGGCCAAG GCCGCGGTCG CCGGCGAGCG CGGCGTGGAG
CTGGAGCTGA CCGAGGACAC CTGGCTCGGC GACACCCCGG ACAAGGTGCA GGCGCTGACC
ACGGTCCTGG GCAACCTGAT CGACAACGCC TTCGACGCGG TGTCCGGACC CGGCGTCGAT
CCGGGCAAGC CCGGCCGGGT CCTGGTCGCG ATCGTCGAGG ACGACGACGG GATCACCGTC
CGCGTCGCCG ACAACGGACC CGGCATCCCC GCCGGCGCCG CCGAGCACGT CTTCACCGAC
GGCTTCACCA CCAAGCCGGC CACGGGATCG ATGCGAAGAG GTCTCGGTCT GGCCCTGGTC
CACCGGCTGG TGCAGCGCCT CGGCGGTACC ATCGCCGCGA CCGAGGGCCC CGGCGCGGTG
TTCACCGTCC GGCTGCCCGA CCAGCGCCCC GAAACCGCCG CGGAGCGCGC GGCGCTGCTG
AGCACCGGAG GAGGCACCAG ACCCCGATGA
 
Protein sequence
MRRGSGRRLS SQIFVSQVSI LLAVVLVGFG LFAVQERRQV DRQYMDEALQ IAQTVADTPE 
VKSCIAFPSI SCDGTLQSIA ARLQRDTRTD YVVIVDEHRI RHTHPKAALI GRPIEEPLVT
KPDVRFDPGS VGESVNGRVP LYSPLGDQIG EVSVGRRVAS VTSVFIGQLP VYAAWFGAAL
AVGALASYVL ARRLKKRTFG LELDEIAKLL QEREAVLHGI REGMIAFDRA GRVTMVNDEA
RRLLGLPMFG GVGGHLADVV PAGRLRDLLS GEIEGKDQVV LTDEYCLTVN RMPVTLAGKP
HGAVVTLRDR TELSGLLREL DSVTSLTDAL RAQQHEFSNR MHTVAGLLEL GEPEEALQYL
TDLSGAEAEF ADSVRARIAP SVLVGLILAK AAVAGERGVE LELTEDTWLG DTPDKVQALT
TVLGNLIDNA FDAVSGPGVD PGKPGRVLVA IVEDDDGITV RVADNGPGIP AGAAEHVFTD
GFTTKPATGS MRRGLGLALV HRLVQRLGGT IAATEGPGAV FTVRLPDQRP ETAAERAALL
STGGGTRPR