Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5561 |
Symbol | |
ID | 8336921 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 6412039 |
End bp | 6412629 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644958665 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003116261 |
Protein GI | 256394697 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.842065 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCCC CCGCCAAGCG TCCGGGTCGC CGGCCCGGTT CGGCTGACAC CCGCGGCGAG ATCCTGGACG CGGCGCGCGC CGAGTTCGCC TCGCGCGGGT ACGAGAAGGC GACGGTGCGG GGGATCGCGC GTGCGGCCGG GGTGGATTCG GCGCTGGTGC ACCACTACTT CGGGTCGAAG GACCGGGTGT TCCTGGCGGC GCTGGAGTTC CCGGTGGATC CGGCGGCGGT GCTGGAGCAG GTGGCCGGGG ATCCGGCGGG GATCGGCGAG CGGCTCGCGC GGCTCGTGGT CGGGTTGTGG GACGTGCCGC AGGCGCGGGA GCGGTTGCTG GCGGTGGTGC GGACGGTCGC CTCGAACGAG GAGATGGCGG TGCTGCTGCG GGGGTTCGCC CGGCCGCAGC TGATCGTGCC GTTGGCGGCG CGGATCGGCG GGCCGGATGC CGAGGCGCGG GTGGAGATGG CGATGGCGCA GATCATCGGG CTGGCGATGG CACGCTATGT GATCGGGGTG GAGCCGGTGG CTTCGCTGGG TTCTGAGGAA CTGATCGCGC TGCTGGCTCC GGCTTTGCAG CGGCTCCTGG TCGGCGAATG A
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Protein sequence | MTAPAKRPGR RPGSADTRGE ILDAARAEFA SRGYEKATVR GIARAAGVDS ALVHHYFGSK DRVFLAALEF PVDPAAVLEQ VAGDPAGIGE RLARLVVGLW DVPQARERLL AVVRTVASNE EMAVLLRGFA RPQLIVPLAA RIGGPDAEAR VEMAMAQIIG LAMARYVIGV EPVASLGSEE LIALLAPALQ RLLVGE
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