Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5330 |
Symbol | |
ID | 8336684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 6144087 |
End bp | 6145403 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644958428 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_003116030 |
Protein GI | 256394466 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.489769 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.341368 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAGGG CACGGAAGCG TTCTGCCGCG GCAATCGCCC TGCTCGTCTC CGGCGCGATG CTCGCGTCCG GGTGCAGCAG CAGCAAGTCG TCCTCGTCAA GCACCAAGAC CACCACCGAC AGCGGCCAGC AGATCACGCT GAAGGTCGGC CTGTTCGGGA CGTTCGGCTT CAAGGAGGCC GGACTTTACG ACCAGTACAT GAAGCTGCAC CCGAACATCA AGATCGTCGA AGACAGCGTC GAGGACGAGG GCCAGTACTA CACCTCGCTG CAGACCCACC TGTCGGCCGG CAGCGGCCTG GACGACATCC AGGGCATCGA GGTCGGCCGC ATCGCCGACG TCGACCAGAA CCTCTCCAGC AAGTTCGTCG ACCTGAACTC CCTGGGCGCG GCGAGCCTGA AGAGCAACTT CTACCCGGCG AAGTGGTCCG CCGCGACCAC CTCCGACGGC AAGGTCATGG CGCTGGGCAC GGACTACGGA CCGCTGGCCA TCTGCTACCG CACCGACCTG TTCAAGGCCG CGGGCCTGCC GACCGACAGC GCCGGTGTCA GCGCGCTGTG GCCGGACTGG AACAGCTACG TCCAGACCGG GCTGAAGTAC AAGGCGAAGG CTCCGGCCAA CCAGGCCTGG ACCGACACCG CCGGCGGTAC GTTCAACGCG ATCGTCGGAC AGTCGGCGAA CCAGTACTAC GACAGCTCCG GCAAGGAGAT CGCGGACACC AACCCGGCCG TGCAGAACGC CTGGAACATC GCGATGCAGC TGTCCACCCA GGGTCTGACC GCGAAGCTGA GCCAGTTCAC GCCGGCCTGG AACCAGGCCT TCACCACCGG CTCGTTCGCC ACGATCGCGT GCCCGGCGTG GATGACCGGC TACATCAAGA GCGAGGCCGG GGCGATGACC GGCGACTGGG GCGTGGCCAA GATCCCCGGC GGCACCGGCG ACTGGGGCGG GTCCTACCTG GCCATCCCCA AGGCTTCCAA GCACCAGAAG GAGGCCTACG ACCTGATCAA CTGGCTGACC AACCCGGACC AGCAGAAGAC CATGTTCACC AGCCAGGGCC ACTTCCCGTC CTCGCAGACG GCGGCCCAGG ACCCGTCCAT CGCCTCGCAC ACCGACCCCT ACTTCGGCGA CTCGCCGCTG GGTCAGATCT ACGCCGCCTC CGCGGCCACG ATCCCGCAGG CCGTGCTCGG CGCCAAGGAC GGGACGATCA AGGACACCTT CTCCAAGGCG ATCACCCGCG TGGAGGCCCA GGGCCAGGCG CCGCAAGCCT CGTGGACGAA GGCCTTGTCC GACATCAAGG CCGCTACCAG CGGCTGA
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Protein sequence | MLRARKRSAA AIALLVSGAM LASGCSSSKS SSSSTKTTTD SGQQITLKVG LFGTFGFKEA GLYDQYMKLH PNIKIVEDSV EDEGQYYTSL QTHLSAGSGL DDIQGIEVGR IADVDQNLSS KFVDLNSLGA ASLKSNFYPA KWSAATTSDG KVMALGTDYG PLAICYRTDL FKAAGLPTDS AGVSALWPDW NSYVQTGLKY KAKAPANQAW TDTAGGTFNA IVGQSANQYY DSSGKEIADT NPAVQNAWNI AMQLSTQGLT AKLSQFTPAW NQAFTTGSFA TIACPAWMTG YIKSEAGAMT GDWGVAKIPG GTGDWGGSYL AIPKASKHQK EAYDLINWLT NPDQQKTMFT SQGHFPSSQT AAQDPSIASH TDPYFGDSPL GQIYAASAAT IPQAVLGAKD GTIKDTFSKA ITRVEAQGQA PQASWTKALS DIKAATSG
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