| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5165 |
|---|
| Symbol | |
|---|
| ID | 8336519 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5932816 |
|---|
| End bp | 5934567 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644958263 |
|---|
| Product | protein serine phosphatase with GAF(s) sensor(s) |
|---|
| Protein accession | YP_003115865 |
|---|
| Protein GI | 256394301 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.115407 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0326575 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGAG ACGGCGGAGC CTCGCGGAGT GATCGTCCAG GAGGGCGCGC CGACGCCCTG
CTCGGTACCG TCGCGTCGTT GAGCTCCGAG CTGCTGCTCG ACGTGCTCGC CGAAGCTCCG
GTCGGGATGG GCCTGCTCGA CGCGGAACTG CGTTGGGTCT ACGCCAACGC CGCCTTCTTC
AGCACGACCG ACCTGGCGGC GTCTCAGATT CTGAACAGGC CGGTCGTCGC GACGCCGTTC
GCCGCCGATC TGCCCGCGAT CAGCCGGGTG CTGCTCGGCG GGAACGTCCG GGACGACGCC
GACGGCGGCG CGTCCGGACC GGTCACCGCG ACGGCGACCG GCTGGCACGT CCGCTATCGG
CGGTTGGCGG CCGACGGCCG GATCACCGGG GTCGTGGCGG CCGTGACCGG GCCCGCGACG
CCTGAGCAGA CCGGTCTCGA CCTGGCGCGG CGCCGATTGG CTGTGCAGGG TGCCGCCGCC
GAGCGCATCG GCACTACGCT GGACGTGGAC ATCACCTGCA TCGAGGTGGC CGAGTTCACC
GTGCCGACGA TGGCCGATCT GACGATCGTC GAGGTGATGC CGTATGGGAT CGCCGATCGC
GGCGCCGGTC CGGGCCCGGG TCCGAGCGGT TCCGGCTCGT TGGAGGCGCC CCGGCTGCGC
CGGGCGGCCC TGGCCTGCGC TCCGGATCTG CGCCGCCGGC TCGGCGCGCT CGCCCTGCCC
GGCGCCTCGG TGCGGCCCGG TGCCGAATCG GCGGTCGCGC GGAGTCTGGC CGAGAGCCGG
TTAGTGGTCG GCAACCAGTT GTCCGACAGG GAGTTGGAAG ACTGGGCAGA GAGCGTCGAA
GCCCTGGCCG CCTATCGGAT GGCCGGTGTG GACTCGATCC TCGCTGTTCC GTTGAGTGCG
CGCGGGCAGC TGGTCGGCGT GATGACGCTG GCGCGCAGCA GCCGTGGCGG CTCGCCGGGG
TTCAGCGACG ACGACACCGT GCTGATCCAA GACCTCGCCG ATCGGGCCGC GGTCAGTATC
GAGAACGCGC GGCAGTACGC CGACTCCCAG AGCGTGACGC TGGAGCTGCA GCGTGCGCTG
CTGGTCGAGC CGGGGCGTCC GCACGCGAAC CTCGAAGTCG CCGCGCGCTA CCTGCCCTCC
GGCAACCGCG CGCTGGTCGG CGGCGACTGG TACGAGATCG TCCGGCTGCC GTTCGGACGG
ACGCTGCTGG TGATGGGCGA CGTCATGGGA CACGGCGTCG AGGCGGCGGT CGACATGAGC
ATCTATCGCT CGGCGATCCG TGACGCCGGG GGCATGGACC TGCCACCGCA CGGGATTCTG
CGGCATCTGG ACACCCTGAT CTCGCAGGAC GAGTCGGCGC GGCCGGCGAC GTGCCTGCTC
GGCGTCGCCG ATCCGAACCG GGGGCGCTGG ACGTTCGCCA GCGCCGGGCA TCTGCCGCCG
GCGCTGTTCT CCGCGGGGCG CCCGACCGAG TTGGTCGCCA TTCCCACCGG TCCGCCGCTG
GGGACCGGGT ACGGCGGGTA CGAGCAGGCG ATCGTCGATC TGCGAGCCGA TCAGGTGTTG
TTGATGTACA CCGACGGTCT CGTGGAGCGG CGCGGCGAGG ACATCGACGT CTCCCTCGCC
CGGCTCGCAG CACTGCCGCT GCCCGCCGGG GGCGGGTTGG AGGATCTTCT CGACGACGCG
CTGCGGCTGG TCGCGCCGCC TGCGGTCGAG GACGACATCG CGATTCTGGC CACTCGCGCG
ACGCCTCGGT AA
|
|---|
| Protein sequence | MERDGGASRS DRPGGRADAL LGTVASLSSE LLLDVLAEAP VGMGLLDAEL RWVYANAAFF
STTDLAASQI LNRPVVATPF AADLPAISRV LLGGNVRDDA DGGASGPVTA TATGWHVRYR
RLAADGRITG VVAAVTGPAT PEQTGLDLAR RRLAVQGAAA ERIGTTLDVD ITCIEVAEFT
VPTMADLTIV EVMPYGIADR GAGPGPGPSG SGSLEAPRLR RAALACAPDL RRRLGALALP
GASVRPGAES AVARSLAESR LVVGNQLSDR ELEDWAESVE ALAAYRMAGV DSILAVPLSA
RGQLVGVMTL ARSSRGGSPG FSDDDTVLIQ DLADRAAVSI ENARQYADSQ SVTLELQRAL
LVEPGRPHAN LEVAARYLPS GNRALVGGDW YEIVRLPFGR TLLVMGDVMG HGVEAAVDMS
IYRSAIRDAG GMDLPPHGIL RHLDTLISQD ESARPATCLL GVADPNRGRW TFASAGHLPP
ALFSAGRPTE LVAIPTGPPL GTGYGGYEQA IVDLRADQVL LMYTDGLVER RGEDIDVSLA
RLAALPLPAG GGLEDLLDDA LRLVAPPAVE DDIAILATRA TPR
|
|---|
| |