Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5139 |
Symbol | |
ID | 8336493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 5897869 |
End bp | 5899428 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644958237 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003115839 |
Protein GI | 256394275 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.306727 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGAAGA TCCGGCAGTT TTCCGAAAGC AGGCAGGTTT CCACGGCTCG GCCGACAGGT GTGGCCGCGG CGATGAGTGC GCTGGTGCTG GCCGTGCTGC TCGCGTCGTT GGACCAGACG ATCGTCTCCA CCGCGTTGCC GCGGATCGCT GAGGATCTGA ACGGCTTCGA CGACATCGCG TGGGTCAGCG CCGCGTATCT GCTGGCCTCG ACCGCGGTCA CGCCGCTGTG GGGGAAGCTC GGCGACATGT TCGGGCGCAA GCGGCTCTAT CTGGCGGCGA CGTCGACGTT CCTCATCGCC TCGGTGGCGT GCGGGGTGGC GCAGAATCTG GCCGAGCTGA TCGGCGCCCG GGTGCTGCAG GGTGTGGGGG GCGGCGGCAT GATCGTGCTG ACCTTCGCGC TGGTCGGCGA CATCGTCCCG CCGGCCGATC GCGGCCGGTA CCAGGGCATG TTCGGGTCGG TCTACGGCGT GGCCAGCATC GTCGGGCCGC TGCTCGGCGG GATCTTCACC GACCACCTGT CCTGGCGGTG GGCGTTCTTG ATCAACCTGC CGGTCGGGCT GGTCGCCCTG GTGATCGCGG CGCGGGCACT TCCGAAGGCG ACGCGCGGAG CCAAGGCGCG CATCGACTAT CTCGGTTCGC TGATCCTGGC TGCGATAGCC ACCGGTCTGG TGCTGGTCAC CTCCTTCGGC CAGCGCTGGG GCTGGGGTTC GCCGGGCATC GTCGGGCTCA TCCTTGCGAC CGTCGCCCTG GCCGCCGTGC TGATCCCGGT CGAGCGCCGC GCCGCCGCGC CGGTGCTGCC GCCGGCGATG CTCGGCTCGC GGACCGTCGT CTTCTCCTCG CTGATCGCCT TCTTCGCCAA CGCCGCGATG TTCTCGGTGC TGGTGTATCT GCCGACCTAC CTGCAGATCG TGCACGGCGT CTCGGCGACG CTGTCCGGAA TCTCGATGCT GCCGCTGGTC GCCGGGTTGG TCGTCAGCCA GTCCCTCGCC GGACGCTGGG CCGCGCACGT CGAACGCCTG CGGGTCATCC TGCTCGCGGG TCTGGCGGCG AACCTGGCCG GGCTGCTTCT GCTGGGCACC ATCGGCGGCG CCACCAGCAC TGTGCTGCTG AGCGTCTACT TCCTGATCAC CGGAATCGGC ATCGGCATGG TCCCGATGGT GGTCCTGACG ACCGTTCAGA ACAGCGTGCC GGCCGGCGAT CTCGGCGCCG CCAGCGCGGT GGTCACCTTC GCGCGCTCCA TCGGCGCCGC GTTCGGCGTC GCGGTCTTCG GCACTTTGCT CAACACCGGC TTCGCCACCG GCACCCGCGG CCTGCCGAGC GCCGGCGGCT TCGACGCCGC CCGCCCCGAC AGCATCGCTC ACCTGCCGGT CGGGCTGCGC CACAGCGCAT TGGACGCTTT CGCGCACGCG ACCGCCAACG GCTACCTGTG GATCGCACCC GCGTTGGCGG TCGGCATCGG GCTCGCGCTG TTCCTGAAGC CCGCCTCGAA GATCGCGTCG GCGGATGACA AGGTTGACTA CGCACTCGCC GCAGCCGACG ACCTGCGCGC GGCTGCCTGA
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Protein sequence | MPKIRQFSES RQVSTARPTG VAAAMSALVL AVLLASLDQT IVSTALPRIA EDLNGFDDIA WVSAAYLLAS TAVTPLWGKL GDMFGRKRLY LAATSTFLIA SVACGVAQNL AELIGARVLQ GVGGGGMIVL TFALVGDIVP PADRGRYQGM FGSVYGVASI VGPLLGGIFT DHLSWRWAFL INLPVGLVAL VIAARALPKA TRGAKARIDY LGSLILAAIA TGLVLVTSFG QRWGWGSPGI VGLILATVAL AAVLIPVERR AAAPVLPPAM LGSRTVVFSS LIAFFANAAM FSVLVYLPTY LQIVHGVSAT LSGISMLPLV AGLVVSQSLA GRWAAHVERL RVILLAGLAA NLAGLLLLGT IGGATSTVLL SVYFLITGIG IGMVPMVVLT TVQNSVPAGD LGAASAVVTF ARSIGAAFGV AVFGTLLNTG FATGTRGLPS AGGFDAARPD SIAHLPVGLR HSALDAFAHA TANGYLWIAP ALAVGIGLAL FLKPASKIAS ADDKVDYALA AADDLRAAA
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